Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00741 ATGTGTAGGAAGATCCAACTCAGTATCACTGATCACACCACCGTTGATGATGGTGGCTGTGACAAGATGGACGGTGAGGATCTCTTCATCCCACCCCTCAATTTTGCCATGGTTGATAACGGCATTTTCCGCTCTGGTTTCCCTGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCTGAGCCATATCCGGAGGCTAACATAGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAGTTTGGGATTGAGGGTCATAAGGTGTGTATCTTTGTCTTTAAGCCTCCCACTGAACCTTTTGTAAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTGAGGAACCATCCAGTTATAATTCATTGTAAGAGAGGAAAGCACCGAACAGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTGTTTGATGAGTACCAGCGCTTTGCTGCTGCGAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCATGAAGCATTTACCAATCCCATTTTCATGTTTGAAGAGGTAA 606 0.4389 MCRKIQLSITDHTTVDDGGCDKMDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANIEFLKSNGIKLYQFGIEGHKVCIFVFKPPTEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSCLKR. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00741 201 Pfam Tyrosine phosphatase family 30 191 IPR004861 -
Seca8g00741 201 Gene3D Protein tyrosine phosphatase superfamily 28 188 IPR029021 -
Seca8g00741 201 FunFam probable tyrosine-protein phosphatase At1g05000 28 188 - -
Seca8g00741 201 PRINTS Plant and fungal dual specificity phosphatase signature 66 79 IPR020428 GO:0016791
Seca8g00741 201 PRINTS Plant and fungal dual specificity phosphatase signature 85 99 IPR020428 GO:0016791
Seca8g00741 201 PRINTS Plant and fungal dual specificity phosphatase signature 29 46 IPR020428 GO:0016791
Seca8g00741 201 PRINTS Plant and fungal dual specificity phosphatase signature 112 126 IPR020428 GO:0016791
Seca8g00741 201 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 186 IPR029021 -
Seca8g00741 201 ProSitePatterns Tyrosine specific protein phosphatases active site. 134 144 IPR016130 GO:0016311|GO:0016791
Seca8g00741 201 PANTHER TYROSINE-PROTEIN PHOSPHATASE 29 190 - -
Seca8g00741 201 CDD PFA-DSP_Siw14 28 185 - -
Seca8g00741 201 ProSiteProfiles Dual specificity protein phosphatase domain profile. 34 195 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00741 Seca-Chr8 9497408 9501585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00741 16 201 Protein tyrosine phosphatase (PTP) family AT4G03960 69.355 6.98e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00741 K18045 - gmx:100799968 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00741 8 9497408 9501585 Seca8g00741 8 9497408 9501585 ECH