Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00725 ATGAGTAGTGGAAATGATATACATAGTGATGAGGAAAATGTGTTTATTCAAGCAGAGGCTGATATGGATGAGGAGAATGATGTTATGGATACAAATGTTAGAGAGGATGTGTCAAGGAGGATAATTGACTTGACAAATGATGATATATGGGCTTTGGAGTTCGCTAGTGAAGACCATGCACTCAATTTTTACCTTTCTTATGCAAAATGTCATGGATTTGCTATGAGGAAGGATGATGTACTTCGAGATAGTAAAGGGATGGTCATAATGCGGCAGTATTTATGTAGTAGGGCTGGTATGAGGGACAAAAAGCATTTGATTATGTTAGATCGGAAAAAGGAACACAGACCTCTTACCCGTACCAATTTTCAAGCTAAGTTGAAAGTTAGGTTTGATTACAAGACGGGTAAATGGAAGGTTGTTTCATTTGAAGAATCTCATAACCATGATTTAACCCCTGCAAAGTTTGTACCTATAATTCGTAATTATCGGGGATTGACTGATAGAGACAAAGCCCAAGTGGATGCATTACATTCTCATGGCATTAGACCTTTCTAG 558 0.3781 MSSGNDIHSDEENVFIQAEADMDEENDVMDTNVREDVSRRIIDLTNDDIWALEFASEDHALNFYLSYAKCHGFAMRKDDVLRDSKGMVIMRQYLCSRAGMRDKKHLIMLDRKKEHRPLTRTNFQAKLKVRFDYKTGKWKVVSFEESHNHDLTPAKFVPIIRNYRGLTDRDKAQVDALHSHGIRPF. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00725 185 Pfam FAR1 DNA-binding domain 62 152 IPR004330 -
Seca8g00725 185 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 6 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00725 Seca-Chr8 9212673 9213230 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00725 FAR1 7.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00725 - - ccaj:109794460 193.356