Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00724 ATGTCGTCAAAGCGTCAATTAATGTTACGCGGGGAATCTTCTGTGGATGAATCTTCGCGATTGACATACCATGTTTTCTTAAGTTTTAGAAGAAATGAAGGCAGCCATTTAGAATTTACTCGCCACTTAATTGCTTCGTTGGAGAGAAAAGGAATCACGACTTTCCCATATGACAGAGATCATCATTATGTGACTTTGCAAGAACTCCATAAAGCAATTGAGGAGTCCCTCGCTGTTATTGTTGTTTTCTCCGAGAACTATGCTTCTTCAACTTTGTGTCTGGATGAACTAGAAAAGATTATTCTTGAATCAAAGAGGGTGCCGGGAGGAAGAGAAGTTTTTCCTGTCTTCTATGATGTCACTCCTGCGGACGTTCGATACCAGATAAGTGGTTTTGGTGAGGCTTTTAGCAAACACGCAGCAAGTTCTGAAGAAGATAAAAGAAAGGTGCAGAAATGGAGAGACTCTTTACAACAAGTTGCGGGTATTTCTGGCTGGGCCTGGGAGTCCAAGAATAGGCATAAGGAAGAGCTCATTGAAGACATTATTACATCGGTATGGACAAAGATACATCCCAAAATTCCAATAAACAATGATGGACTAGTTGGAATTGATTACAAAGTTAGAAAAATGCAATCACTTTTAAGAATAGAATTAGAGGACGTTCGTTTCATAGGAATATGGGGCATGGGTGGCATTGGAAAGACAACTCTAGCAAGAGTTGTATTCAACAAAATTCGTAACAAATTTGATGTTAGTTGCTTCCTTCACAATGTTAGGAAGATTTGTGCTGAAACAAATGGCATGCTTAGACTACAAAGAACACTTCTTTCCCATCTAAAACTAGAAGGCTTGGAAGTTGAAGATTTGGGCGAAGGAAAGAGTAAGATACAAGAGGTATTGTTCAACAAAAAAGTTCTCCTCGTCATTGATGATGTTGATGATGTGAGACATTTAGAGAGTTTGGTTGAGAGAAAAGAGTGGTTTGGTTATGGGAGCAGGGTTATAATAACTACAAGAGACATGCAGTTACTAACATCATATGGAATGGATGAAAGTACTTATAAAATTGATTTTTTAAATTCAGAAGAGTCCATTCAACTCTTCTCTCAGAAAGCCTTTAAATGTGATCAACCACAAGAGCCTCATTTGGAATTGTCAAAATTTGTTGTGCAATATTCTGGAGGTCTTCCTCTGGCTCTTGAGAGGTTGGGTTCTTTTCTTTGTGGAAGGGAAGAATCTCAATGGAAAGAAGTTTTGGATAAGATAAAGGAATGTCCAGAGAATGATATTATAATGGAAAAACTTAGAATAAGTTATGATAGGTTACCAGAACGTTATAAGGCTTTATTTCTTGATATCGCATGTTTCTTTAATGGGTGGGTAAAAGAGCATGTGATACAAATTCTAACAATTTGTGAACGTTATCCACCAGATGGAATTAAAGTTCTAATTGATAAATCGTTAGCAACTTATGATGGGTTTCATTTGGGGATGCATGATCTACATCAAGAAATGGGAAGAAAAATTGTTATTGAAGAATGTATTACAGATGCTGGCAAACGTAGTAGATTGTGGTCTCTGGAGGACATTGATCTAGGGTTGAAAAATAATAAAGTAACTGATTTGATTCAAGGTATAGTTTTGAAGTCATCCACTCAACCATACAAAGCAATTTGGGATCCTAAAGTCTTCTTAAAGATGAATAATCTTAAATTCCTTATAATTAATTTTCATAACATGCATCTTCCTCTTAGCCTTAAATGTCTTTGTAGTTCACTAAAAGTACTTCAATGGATGGGGTATCCTTTGGAAGCTCTGCCACTTGGTGTACAACTAGATGAAGTTGTAGACTTGAAAATGTGTCACAGCAAAATAAAAAAGATTTGGAAAGGAAATCAGACCTTGACAAAGTTGAAGTTCATTGATCTAAGCCATTCCAAAGATCTAATTCAAACCCCTATAGTTTCTGGGGCTCCATGTCTAGAAAGTTTACTTCTTGAAGGTTGTATAAACCTTGTTAAGGTTCATCGATCTGTTGCAAAACACAAGAAGCTTGTTGTATTGAACTTGAAAGATTGCATAAATCTTCAAATCCTTCCAAGAAAATTGGAAATGGATTCTTTGGAGGAGTTTATTCTTTCTGGCTGCTCAAAAGTTAAAAATCTCCCTAAGTTTGGGAAGAATATGAAAAGTTTATCCTGGCTTAATTTGGAGGATTCCAATAACCTTCTATATCTGCCAAATTTTACTTGCAATCTGAAATCTCTTAGAATTCTCAATATCTATGGTTGCTCAAAAATTTCTAAACTACCCAACAATATGAATGAAAATGAGTCTTTGGAGGAACTTCATATGAATGGGAGTGCCATAAGAGAAATCACTTCATCCAAAGTTTGTTTAGGAAATCTAAAAGATCTCTCCTTTGGTGGAAGAATAGAACTAGCATCCAACTCATGCAACTTACTTCAATGGATCTTGAAGTTCAAGAAGCAACCAATTCCAATAATGGAGTTGATCTTGCCTCCTCTTTCACATTTATCCAGATTGAAGTTCTTGGATTTAAGTTACTGTGACCTTAAGGATGAATCAATTCCGGGTGATCTTGGTTCCTTATCATTTTTGCAAGGTTTAGATCTAAGTGGGAACAATTTTGTTAATCCACCTACACACTGCATTAGTAATCTTTCCATGCTGCAGAGTTTGACCATAACTGATTGTCCAATGCTTGAGTCATTGCCTATGCTTCCACCAAATGTACAATGCTTATTTGCAACTAATTGCACCCAAATGAAACCCTTAAATTTGGATGCACAAATGCTATGGAACATCTTTGAGTCACATATGAATCAGCAGATGGAAGATAAGCCACATCTTTGGTTCATCATTCCTGGGAGAGAAATTCCACCATGGTTTGACAATAAAAAATATGATTTGATTAATCCATTACATCATCCATATAACAAGTTAGGTTGTGATTCATTTGCATCAATAAAAGTGGAAGTACCTAATCACTGTGGTTCAAGTAAATGGTGGGGCATTGCAATATGTCTAGTATTAGAACCTACAAATATACAACAATCCCCATCACATGTGAGACCAACTTCCATGGTTAACGAGGAAACATGCATTTATTATTGGACCTGTAAAGATCCTGATCGAGAACCTGACTTGGCTTTCCCCTTAGGACCTTTATTTGGCCACTTAGTTTATGAATGTGGTGACCCTTACATTCATATAATATTCTTGAGAGGTGATCATACATATATTCAACATTATCTAAGAGGAGAGAAAGGCCAAATTCAACTGATATTTTATGTGGAAAATTTTTCTAAGCCAGGGAAGCCAACAGTAAAACAGTGTGGGTGTCGAGTGATATCTAAGGAAGATGTTGAAAATTGGCGAAAGGACTCAAGTGGTCTTAACATATCAAAATTTGTAGAAATAAATGATAATAAGCGAAGTGGTGATGAAATAGAAGTGGAAGAGCCTGCAACATCTACATCACAAAATTAG 3516 0.3632 MSSKRQLMLRGESSVDESSRLTYHVFLSFRRNEGSHLEFTRHLIASLERKGITTFPYDRDHHYVTLQELHKAIEESLAVIVVFSENYASSTLCLDELEKIILESKRVPGGREVFPVFYDVTPADVRYQISGFGEAFSKHAASSEEDKRKVQKWRDSLQQVAGISGWAWESKNRHKEELIEDIITSVWTKIHPKIPINNDGLVGIDYKVRKMQSLLRIELEDVRFIGIWGMGGIGKTTLARVVFNKIRNKFDVSCFLHNVRKICAETNGMLRLQRTLLSHLKLEGLEVEDLGEGKSKIQEVLFNKKVLLVIDDVDDVRHLESLVERKEWFGYGSRVIITTRDMQLLTSYGMDESTYKIDFLNSEESIQLFSQKAFKCDQPQEPHLELSKFVVQYSGGLPLALERLGSFLCGREESQWKEVLDKIKECPENDIIMEKLRISYDRLPERYKALFLDIACFFNGWVKEHVIQILTICERYPPDGIKVLIDKSLATYDGFHLGMHDLHQEMGRKIVIEECITDAGKRSRLWSLEDIDLGLKNNKVTDLIQGIVLKSSTQPYKAIWDPKVFLKMNNLKFLIINFHNMHLPLSLKCLCSSLKVLQWMGYPLEALPLGVQLDEVVDLKMCHSKIKKIWKGNQTLTKLKFIDLSHSKDLIQTPIVSGAPCLESLLLEGCINLVKVHRSVAKHKKLVVLNLKDCINLQILPRKLEMDSLEEFILSGCSKVKNLPKFGKNMKSLSWLNLEDSNNLLYLPNFTCNLKSLRILNIYGCSKISKLPNNMNENESLEELHMNGSAIREITSSKVCLGNLKDLSFGGRIELASNSCNLLQWILKFKKQPIPIMELILPPLSHLSRLKFLDLSYCDLKDESIPGDLGSLSFLQGLDLSGNNFVNPPTHCISNLSMLQSLTITDCPMLESLPMLPPNVQCLFATNCTQMKPLNLDAQMLWNIFESHMNQQMEDKPHLWFIIPGREIPPWFDNKKYDLINPLHHPYNKLGCDSFASIKVEVPNHCGSSKWWGIAICLVLEPTNIQQSPSHVRPTSMVNEETCIYYWTCKDPDREPDLAFPLGPLFGHLVYECGDPYIHIIFLRGDHTYIQHYLRGEKGQIQLIFYVENFSKPGKPTVKQCGCRVISKEDVENWRKDSSGLNISKFVEINDNKRSGDEIEVEEPATSTSQN. 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00724 1171 Pfam TIR domain 23 202 IPR000157 GO:0007165
Seca8g00724 1171 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Seca8g00724 1171 SMART till_3 22 163 IPR000157 GO:0007165
Seca8g00724 1171 Gene3D Ribonuclease Inhibitor 523 705 IPR032675 -
Seca8g00724 1171 Pfam NB-ARC domain 207 436 IPR002182 GO:0043531
Seca8g00724 1171 Gene3D - 359 444 IPR042197 -
Seca8g00724 1171 Pfam Leucine Rich Repeat 617 634 IPR011713 -
Seca8g00724 1171 SUPERFAMILY L domain-like 499 941 - -
Seca8g00724 1171 Gene3D - 16 189 IPR035897 -
Seca8g00724 1171 Gene3D Ribonuclease Inhibitor 706 943 IPR032675 -
Seca8g00724 1171 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 166 IPR035897 -
Seca8g00724 1171 PRINTS Disease resistance protein signature 634 650 - -
Seca8g00724 1171 PRINTS Disease resistance protein signature 300 314 - -
Seca8g00724 1171 PRINTS Disease resistance protein signature 394 408 - -
Seca8g00724 1171 PRINTS Disease resistance protein signature 224 239 - -
Seca8g00724 1171 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 725 IPR044974 GO:0006952
Seca8g00724 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 454 IPR027417 -
Seca8g00724 1171 Gene3D - 190 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00724 Seca-Chr8 9200675 9211617 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00724 6 809 WRKY Transcription Factor Family AT4G12020 30.998 1.47e-88 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00724 - - gmx:100799850 1396.33