Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00719 ATGGTGTTGCACACTCAGTTTCAAATTCAATCGTTTCTCTTTACATTTTTCTGTTCCTTTTTCATAATCTTTTCTTCCACCCCAGTTGCTGCCATTTTCACTGTTCCTTCTATTACTACTACAGTTAGTTATGAAGCTGCACAAGACCAAAACAATGAAGCAAGTGCTTTGTTAGCATGGAAAGACACACTTGACAATCAAAACACAAGTTTGTCTTCTTGGACCAAAGGTGCCAGTCCCTGCACCTGGGAAGGAATCATTTGTGGTGAATCCAACTCTGTTTCCACTATAAATGTTGCAAATTTTGGACTAAAAGGTACCCTTCTCAGTCTTAACTTCTCATGCTTTCCTAAGCTGCTCATTTTGGATATAAGTAACAACTCCTTTCATGGAAATATTCCCCACCAAATTAGTAACTTGTCCAGAATTTCTGAATTGAGAATGGGTGATAATTTTTTAAATGGTTCCATCCCCAAAGAAATAGGGGCACTAAGGAATCTAAGTGAGCTTCACATTCCTAGATGTAATCTCACTGGCCCAATCCCTGATTCCATAGTGAAGTTGGCCAATTTGTCATACATAGATTTAGGAAATAACCAACTTTCTGGTCACATTCCTCAGCAGATTGGAGAGATGAGGAACTTGAAGTATGTATTGTTTGGATCAAATGGACTTTTGGGTCCAATTCCCTCAACAATTGGGATGTTGACAAATCTTGTTGAGCTTGATTTGTCAGATAATGTCCTCAATGGTACAATTCCTTCACTGAGAAACTTGAGAAATTTAGAACAACTTTACCTCCATAACAACAGTCTCTCTGGGCCTATTCCTGAGGAAATTGGGAAACTCTATTCTCTCACAACAATCCAATTGTTATTCAATAACTTGTCTGGGCCAATACCACCCTCCATAGGAAACTTGGTCAATTTGAATTCTCTTAAACTTGGAAATAACAAACTTTATGGATCAATTCCATCTTCTCTTGGAAACTTGACAAAGCTCTCCAAGTTGTCCATGAACCATAACAGTCTTTCTGGATCAATTCCTACTACCATGGGAAACTTGGTCAACTTAGAGGGGCTTAACCTTGCAGAAAACAAACTCTCTGGACCTATTCCTTCTTCCTTTGGAAATATGACAAAGCTCAACTTTCTATTACTCTATGACAACAATTTTACTGGTAGGATCCCATCATCAATGAATAACCTTACCAATTTGATAAGCTTGCAACTAAGTACGAATGGTTTCATTGGCCCTTTGCCACAAGAAATTTGCCATGGTCAGTTGCTTGAAAAATTTGCTGCAAATGATAATTATTTCACTGGTCAAGTTCCAAGAAGCTTGAAGAATTGCCCTAGCCTTATTAGACTCAATCTTGTTGAAAACTTCTTGGTTGGAAATATATCAGATGATTTCGGTGTATATCCAAAATTAGACTACATTGATCTTAGTAACAATCATTTTTTTGGCCACCTTTCACCAAATTGGGCCAAGTGTCCTAGTCTCACAAGCCTTTCAATGTCCAATAACAATTTATCAGCTGGTATACCACCAGAGCTAGGCCAAGCACCCAAGTTACAAAGACTTCAACTTTCTTCAAATCATCTAAATGGGAAACTTCCAAAAGAACTTGGTAACTTGACCACATTGTTTGAACTCTCCATAAGTGGCAATGAACTTTCAGGCAATATTCCTATAGAAATAGGATCTTTGCTAGAACTTCGACGTATGGAGCTGGCAGAAAATAATTTAAGTGGTCCAATCCCAAAACAGGTTGGAGAGTTACTCAATTTATTTCAATTGAATTTGAGCAAAAATAATTTCATAGGAAGCATTCCATCTGAAATTGGGCAACTGCAATCTCTTCAAAATCTCGATCTCAGTGGGAATTTGTTGAATGGAAAAATACCAGCAATGCTTGGAAAGTTGAGAAAATTGGAAACATTGAACCTCTCCCACAATAATCTCTCTGGCACAATTCCATCTGATTTTGAGGATATGTTCAGCTTGACATATGTTGATATATGTAACAATCAATTAGAAGGTCCAATTCCTAACAATTCAGCCTTTCTTAAGTGTTGTAATGTTTCTAGCTTGGTCATTTGTCAACAGTTGAGTCATAACCAGAAGAAAAAACATGTCATTCTGTTGGCATCATTCCTTACTTTGGGTGCTCTATTGCTAGTAGTAGTGTTTGTGGCTGGACTTTCTTTATGTCATTGGCAAAGAGCAAGAAAAATAATCCAAAAGCAGGATAAAGAAGAACAACATACTCAAGATAATTTTTCCATATGGAGTGATGGAAAAATAGTGTATGAAAATATCATTGAAGCCACAGAGGATTTTGATGACAAATATCTCATTGGAAAAGGAGGGTCTGGATCTGTTTACAAGGCTAACTTACCCTGTGGCAAGGTTTTTGCTGTGAAAAAACTTCATGATACAGTTGATGGAGAAATGCCTAAAGCTTTTACAAATGAGGTTCGAGCCTTGACAGAAATCAAACATCGTAACATTGTCAAGTTGTGTGGATTTTGTTCCCATCCACGCTACCCTTTTCTAGTTTATGAGTTTGTAGAAGGTGGCAGCTTGGATAAAATACTAAACATTGATGCACAAGCAATAATGTTTGATTGGAATAAGAGGGTGAATGTTGTCAAAGGTGTGGCAAATGCTTTGTACCATATGCATCATGGTTGCTCTCCTCCTATAATTCATCGTGACATATCAAGCAAAAATGTTCTTTTAGATTCAGCATATGAAGCTCGCATCTCAGACTTTGGAATAGCTAAGATTTTGAGTCATGATTCACGTTGTTCAACCACTTTCGCAGGCACCTATGGATATGTTGCACCAGAACTTGCTTATAATATTGAAGCAAATGAGAAATGTGATGTCTTTAGTTTTGGGGTGCTTTCTTTGGAAATAATGATGGGAAAGCATCCAGAAGAAATCATTTCTTCATTGTTTTCATCCCCTGAAATGGCAGTAACATCAAAGTTGCTATTGATGGATGTGTTGGACCAACGACTTCCCCATCCAATGAAGTTCTCAATTGTTAAAGAGGTGATCTTGATTGCTAGAATAACATTTGCATGCTTGAGTAAAAGTCCAGAGTCTCGCCCCACCATGGAACAAGTGTATAAGGAGTTTGTGATGCCAACATCATCTTTAGAGAATCCATTCCCCACAATCACACTTGGACAACTAAATAATTGA 3219 0.3759 MVLHTQFQIQSFLFTFFCSFFIIFSSTPVAAIFTVPSITTTVSYEAAQDQNNEASALLAWKDTLDNQNTSLSSWTKGASPCTWEGIICGESNSVSTINVANFGLKGTLLSLNFSCFPKLLILDISNNSFHGNIPHQISNLSRISELRMGDNFLNGSIPKEIGALRNLSELHIPRCNLTGPIPDSIVKLANLSYIDLGNNQLSGHIPQQIGEMRNLKYVLFGSNGLLGPIPSTIGMLTNLVELDLSDNVLNGTIPSLRNLRNLEQLYLHNNSLSGPIPEEIGKLYSLTTIQLLFNNLSGPIPPSIGNLVNLNSLKLGNNKLYGSIPSSLGNLTKLSKLSMNHNSLSGSIPTTMGNLVNLEGLNLAENKLSGPIPSSFGNMTKLNFLLLYDNNFTGRIPSSMNNLTNLISLQLSTNGFIGPLPQEICHGQLLEKFAANDNYFTGQVPRSLKNCPSLIRLNLVENFLVGNISDDFGVYPKLDYIDLSNNHFFGHLSPNWAKCPSLTSLSMSNNNLSAGIPPELGQAPKLQRLQLSSNHLNGKLPKELGNLTTLFELSISGNELSGNIPIEIGSLLELRRMELAENNLSGPIPKQVGELLNLFQLNLSKNNFIGSIPSEIGQLQSLQNLDLSGNLLNGKIPAMLGKLRKLETLNLSHNNLSGTIPSDFEDMFSLTYVDICNNQLEGPIPNNSAFLKCCNVSSLVICQQLSHNQKKKHVILLASFLTLGALLLVVVFVAGLSLCHWQRARKIIQKQDKEEQHTQDNFSIWSDGKIVYENIIEATEDFDDKYLIGKGGSGSVYKANLPCGKVFAVKKLHDTVDGEMPKAFTNEVRALTEIKHRNIVKLCGFCSHPRYPFLVYEFVEGGSLDKILNIDAQAIMFDWNKRVNVVKGVANALYHMHHGCSPPIIHRDISSKNVLLDSAYEARISDFGIAKILSHDSRCSTTFAGTYGYVAPELAYNIEANEKCDVFSFGVLSLEIMMGKHPEEIISSLFSSPEMAVTSKLLLMDVLDQRLPHPMKFSIVKEVILIARITFACLSKSPESRPTMEQVYKEFVMPTSSLENPFPTITLGQLNN. 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00719 1072 Gene3D Ribonuclease Inhibitor 302 401 IPR032675 -
Seca8g00719 1072 SUPERFAMILY L domain-like 76 349 - -
Seca8g00719 1072 Gene3D Ribonuclease Inhibitor 207 301 IPR032675 -
Seca8g00719 1072 SUPERFAMILY L domain-like 253 558 - -
Seca8g00719 1072 FunFam Leucine-rich repeat receptor protein kinase MSP1 746 858 - -
Seca8g00719 1072 SMART LRR_sd22_2 236 264 - -
Seca8g00719 1072 SMART LRR_sd22_2 331 357 - -
Seca8g00719 1072 SMART LRR_sd22_2 619 651 - -
Seca8g00719 1072 SMART LRR_sd22_2 188 203 - -
Seca8g00719 1072 FunFam MDIS1-interacting receptor like kinase 2 isoform A 326 423 - -
Seca8g00719 1072 Pfam Protein kinase domain 784 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00719 1072 FunFam MDIS1-interacting receptor like kinase 2 859 1057 - -
Seca8g00719 1072 Gene3D Phosphorylase Kinase; domain 1 742 858 - -
Seca8g00719 1072 Pfam Leucine rich repeat 476 536 IPR001611 GO:0005515
Seca8g00719 1072 Pfam Leucine rich repeat 621 680 IPR001611 GO:0005515
Seca8g00719 1072 ProSiteProfiles Leucine-rich repeat profile. 645 666 IPR001611 GO:0005515
Seca8g00719 1072 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 424 713 - -
Seca8g00719 1072 ProSiteProfiles Protein kinase domain profile. 782 1063 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00719 1072 FunFam Nuclear pore complex protein NUP107 50 205 - -
Seca8g00719 1072 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Seca8g00719 1072 Gene3D Ribonuclease Inhibitor 49 206 IPR032675 -
Seca8g00719 1072 Gene3D Transferase(Phosphotransferase) domain 1 859 1059 - -
Seca8g00719 1072 ProSitePatterns Tyrosine protein kinases specific active-site signature. 904 916 IPR008266 GO:0004672|GO:0006468
Seca8g00719 1072 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 232 325 - -
Seca8g00719 1072 PANTHER LEUCINE RICH REPEAT KINASE 2 353 1058 - -
Seca8g00719 1072 PRINTS Leucine-rich repeat signature 239 252 - -
Seca8g00719 1072 PRINTS Leucine-rich repeat signature 643 656 - -
Seca8g00719 1072 SMART LRR_typ_2 188 212 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 403 427 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 307 331 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 524 547 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 355 378 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 643 666 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 595 619 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 499 523 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 236 258 IPR003591 -
Seca8g00719 1072 SMART LRR_typ_2 259 283 IPR003591 -
Seca8g00719 1072 Gene3D Ribonuclease Inhibitor 402 708 IPR032675 -
Seca8g00719 1072 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524
Seca8g00719 1072 ProSiteProfiles Leucine-rich repeat profile. 238 260 IPR001611 GO:0005515
Seca8g00719 1072 SUPERFAMILY Protein kinase-like (PK-like) 767 1050 IPR011009 -
Seca8g00719 1072 SUPERFAMILY L domain-like 477 703 - -
Seca8g00719 1072 Coils Coil 1072 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00719 Seca-Chr8 9033109 9036956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00719 32 978 Receptor kinase-like Gene Family AT4G08850 43.075 0.0 719
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00719 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00719 - - gmx:100797314 1170.99