Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00717 ATGTCCACAAAGCTTGTACCATTTTTGTTGATTCTCATCACGTTTTTCTGTTCACTTTTAAGGCTCTCTTTCTTCCATGTTTCTGCCACTACTGATGATCAAGACAGAGAAGCAAGTGCTCTATTGAAGTGGAAAGCCAGCCTTGACAATCATAGCCAAGCTTCCTTGTCTTCTTGGACCATAGTTACCACTCCTTGCAATTGGGGGGAAGAAATTGGTTGTGATGAAACCAACTCTGTGACCACCATAAATGTTGCAAATTTTGGACTTAAAGGTACTCTTTTTAGTCTCAATTTTTCATCCTTTCCTATGTTACTCACTCTGGACATAAGTAACAACTCATTTTATGGAACCATTCCTCAGCATATTGGTAACTTGTCCAGAATTACTCAACTGAAAATGGGTCATAATCTTTTCAATGGTTCCATTCCTCAAGAAATAGGGGCACTAAGAAGTCTAAGACAGCTTAATTTAAGAGGAAATAGACTTTCTGGTTCCATTCCCCCAACAATTGGAATGTTGAAAAGTCTTGTTATACTTGATTTGTCAATTAACTCTCTCTTTGGTGCAATCCCTTCAATTAGAAGCTTGAGAAATTTAGAACATCTTGTCCTCTTTAAAAACTGTCTCTCTGGACCTATTCCTGAGGATTTGGGAAGACTCTCTTCTCTCATAAGAATCAAGTTGGTATCCAATAATTTGTCTGGGCCAATCCCATCTTCCATAGGAAACTTGGCCAATTTGAGCAGTCTTAGACTCTTTGATAATAAACTTGATGGAACAATACCTTCCACTCTTGGAAACTTGACAAAACTCATTTTTTTGTCCCTGAATATGAACAAGCTTCATGGATCAATTCCTGCTTCATTGGGAAACTTGATCAATCTAAAGAGGCTTAGCCTTTCAGAAAACTATCTTTCTGGACCTATTCCTTCTACCTTTGGAAATTTGACAAAGCTCACTGGGTTATTACTTTATAATAACAACCTTAATGGTAGCTTTCCAAAGAATAACCTTACCAATTTAGAAACCTTACAGCTAAGTGCAAATCATTTCACTGGCCATTTGCCACCACAGATTTGCCTTGGTGGATCACTTGTAAATTTTTCTGCTAACAAGAATCATTTCAGTGGTCCAGTTCCAACAAGCTTGAAGAATTGTTCCAAGCTTTTCAGACTCAACCTTGCAGACAATATGTTGATTGGAAATATTTCAGATGATTTTGGTATATATCCAGATTTGAGGCACATTGATCTGAGTAGCAATAATTTTTATGGCCACATTTTGCCAAATTGGGCAAAAAGCCATAATCTCATTGGCCTATTCATGTCTAACAACAATTTATCTGGTGGTATACCACCAGAACTAGGACAAGCATCAAAGTTACAATCACTTAAACTGTCTTCAAATCATCTGACAGGAAATATTCCAAAGGAACTTTGTAACTTGACCTCATTGTTTGAACTCAACATAAGTAACAATGAACTTTCAGGCAACATTCCCACAGAAATAGGATCCATGCACATGCAGAGACTTAAACACTTGGATCTGGCAGGAAATAATATGAGTGGCTCAATCCCAAAACAGGTTGGAGATCTGCTCAATTTAGTTTTGTTGAATTTGAGCAAGAATAAGTTCATAGGAAGCATTCCCTCTGAATTCAACCACTTGCATTCTCTTGAAAATCTTGATCTTAGTGGAAATTCCTTAGATGGACAAATACCAGAAGCTCTTGGGAAGTTGCAAAAATTGATCACATTGAACCTCTCACACAATAACCTCTCTGGGACCATTCCATCCAATTTTAAGGACATGATAAGCTTGATAAATGTTAACATCTCTAACAACCAATTAGAGGGTCCAATCCCTAACAATCCAGCCTTTCTTGAGGCTCCATTTGAAGCATTGAGAAATAATAAAGACTTGTGTGGTAATACCTCCCACTTGAAGCCTTGCAAAGAGTTGGTTCACAACAGAAAGAAAAATGTCTTGATATTGGCACTAGTCCTTACTCTGAGTGTGCTATTTTTGCTAATGTTTGTGATTGGAGTTTTATTATGTATTCAATGGGAAAAAGCTAGAAAAATCCAAAAGCAGGCTAGAAGAGAACAAACTCAAGATCTTTTCTCCATATGGAGTTATGATGGGAAAATGGTGTATGAAAATATCATTGAAGCCACAGAGGAGTTTGATAACAAATATCTCATTGGAAAAGGAGGATTTGGAACTGTTTATAAGGCTATCTTATCCTCTGGCCAGGTTGTTGCTGTGAAAAAACTTCATGCTGCAGTTGATGGGGAAATGCTCAATTTTAAAGCTTTCAAGAATGAGGTTCAAGTCTTGACAGAAATCAAGCATCGTAACATTGTGAAGTTGTATGGATATTGTCAACATCCACGTTATTCTTTTCTGGTTTATGAGTTCATAGAAGGAGGAAGCTTGGATAAAGTACTAAACAATGATACACAAGCAATGATGTTTGATTGGAACAAGAGGGTGAATGTTGTTAAAGGTGTCACAAATGCTCTATATCATATGCATCATGGTTGCTCTCTTCCTATTATTCATCGTGACTTATCAAGCAAGAATGTTCTTCTAGATTTGGAATATGAAGCTCGCATCTCAGATTTTGGAACAGCTAAAATTCTGAATCTTAATTCACACACTTCAACCACATTTGCAGGCACTTATGGATATGCAGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTCTTCAGTTTTGGAGTGCTCTCTTTGGAAATAATGATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTGTTGTCATCATCTACAACGCCAATTGAATCTAATTTGCTATTGAAGGATGTGATGGACCAACGGCTTCCTCGTCCAATGAGGCCAATTGTTAAGGATGTGATATTGATTGCAAAAATGGCATTAGCTTGTTTGAATGAAAGTCCACGTGCTCGCCCAACTATGGAAGAAGTGTATAACACATTTGTAATGTCAAAATCACCTATAATGGAGACATTCAACATCATCACACTTGGACAACTTCTAAATTATTGA 3069 0.3728 MSTKLVPFLLILITFFCSLLRLSFFHVSATTDDQDREASALLKWKASLDNHSQASLSSWTIVTTPCNWGEEIGCDETNSVTTINVANFGLKGTLFSLNFSSFPMLLTLDISNNSFYGTIPQHIGNLSRITQLKMGHNLFNGSIPQEIGALRSLRQLNLRGNRLSGSIPPTIGMLKSLVILDLSINSLFGAIPSIRSLRNLEHLVLFKNCLSGPIPEDLGRLSSLIRIKLVSNNLSGPIPSSIGNLANLSSLRLFDNKLDGTIPSTLGNLTKLIFLSLNMNKLHGSIPASLGNLINLKRLSLSENYLSGPIPSTFGNLTKLTGLLLYNNNLNGSFPKNNLTNLETLQLSANHFTGHLPPQICLGGSLVNFSANKNHFSGPVPTSLKNCSKLFRLNLADNMLIGNISDDFGIYPDLRHIDLSSNNFYGHILPNWAKSHNLIGLFMSNNNLSGGIPPELGQASKLQSLKLSSNHLTGNIPKELCNLTSLFELNISNNELSGNIPTEIGSMHMQRLKHLDLAGNNMSGSIPKQVGDLLNLVLLNLSKNKFIGSIPSEFNHLHSLENLDLSGNSLDGQIPEALGKLQKLITLNLSHNNLSGTIPSNFKDMISLINVNISNNQLEGPIPNNPAFLEAPFEALRNNKDLCGNTSHLKPCKELVHNRKKNVLILALVLTLSVLFLLMFVIGVLLCIQWEKARKIQKQARREQTQDLFSIWSYDGKMVYENIIEATEEFDNKYLIGKGGFGTVYKAILSSGQVVAVKKLHAAVDGEMLNFKAFKNEVQVLTEIKHRNIVKLYGYCQHPRYSFLVYEFIEGGSLDKVLNNDTQAMMFDWNKRVNVVKGVTNALYHMHHGCSLPIIHRDLSSKNVLLDLEYEARISDFGTAKILNLNSHTSTTFAGTYGYAAPELAYTMEVNEKCDVFSFGVLSLEIMMGKHPGDLISSLLSSSTTPIESNLLLKDVMDQRLPRPMRPIVKDVILIAKMALACLNESPRARPTMEEVYNTFVMSKSPIMETFNIITLGQLLNY. 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00717 1022 SUPERFAMILY RNI-like 262 621 - -
Seca8g00717 1022 SUPERFAMILY RNI-like 94 335 - -
Seca8g00717 1022 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Seca8g00717 1022 ProSitePatterns Protein kinases ATP-binding region signature. 736 759 IPR017441 GO:0005524
Seca8g00717 1022 Gene3D Ribonuclease Inhibitor 248 337 IPR032675 -
Seca8g00717 1022 Gene3D Transferase(Phosphotransferase) domain 1 809 1010 - -
Seca8g00717 1022 Gene3D Ribonuclease Inhibitor 194 247 IPR032675 -
Seca8g00717 1022 Pfam Protein kinase domain 732 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00717 1022 SMART LRR_typ_2 197 221 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 102 126 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 339 363 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 245 269 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 150 174 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 483 507 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 293 316 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 557 580 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 509 533 IPR003591 -
Seca8g00717 1022 SMART LRR_typ_2 581 604 IPR003591 -
Seca8g00717 1022 SUPERFAMILY Protein kinase-like (PK-like) 710 1000 IPR011009 -
Seca8g00717 1022 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 337 - -
Seca8g00717 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 339 656 - -
Seca8g00717 1022 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515
Seca8g00717 1022 Pfam Leucine Rich Repeat 583 603 IPR001611 GO:0005515
Seca8g00717 1022 FunFam Nuclear pore complex protein NUP107 34 193 - -
Seca8g00717 1022 ProSitePatterns Tyrosine protein kinases specific active-site signature. 854 866 IPR008266 GO:0004672|GO:0006468
Seca8g00717 1022 ProSiteProfiles Protein kinase domain profile. 730 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00717 1022 Gene3D Ribonuclease Inhibitor 338 655 IPR032675 -
Seca8g00717 1022 FunFam Leucine-rich repeat receptor protein kinase MSP1 692 808 - -
Seca8g00717 1022 Coils Coil 1020 1022 - -
Seca8g00717 1022 FunFam MDIS1-interacting receptor like kinase 2 809 1006 - -
Seca8g00717 1022 Pfam Leucine rich repeat N-terminal domain 35 68 IPR013210 -
Seca8g00717 1022 PANTHER LEUCINE RICH REPEAT KINASE 2 266 1005 - -
Seca8g00717 1022 Gene3D Phosphorylase Kinase; domain 1 690 808 - -
Seca8g00717 1022 Pfam Leucine rich repeat 511 570 IPR001611 GO:0005515
Seca8g00717 1022 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00717 Seca-Chr8 8971331 8974737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00717 8 902 Receptor kinase-like Gene Family AT4G08850 44.325 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00717 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00717 - - gmx:100800924 1307.74