Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00713 ATGATGTTGTGGACCACTACTACTACTACTATTCCTCTGTTATTGTTCCTGGTGGTAGTGATAACTTTCTCCATCCCAGAAACACAAGCACAACAAGAATACGTTAACAACAAGCAGCTAGATTGTGAAAACGAATACAACTCCACAAAAGGGAATCTTTGCAACAGCATCCCTTCATGCCAATCTTACCTCACCTTCAAATCTTCCCCTCCTGAATACAACACCCCCACTTCAATCTCCTACCTTCTCAACTCAAAACCTTCCCTCATAGCCACATCCAACAACATCACCGACGTTGATCCCATCTCCACCGACACCATGATCACCATCCCCATCGATTGCTCCTGTTCTGGCAAATACTACCAACACAACGCTTCCTACACCTTGAAGAAAAAAGGGGAAACATACTTCACCATTGCCAACAACACCTACCAAGCTCTCACCACGTGTCAAGCTCTCATAGCTCAGAACACCTATGCGGTTCGCAACCTTGTTGCTGGTGACAACCTCACTGTGCCTCTCAGGTGCGCTTGTCCTACCAAGAAACAGAGTGATGCAGGGTTCAAGTACTTGCTCACCTACCTTGTTTCTCAAGGGGAATTGGTTTCTTCAATTGGTGATATCTTTGGTGTTGATGAACAGAGCATTTTGGATGCAAATGAGCTTTCTTCTAGTTCTTCTGTTTTCTACTTTACACCCCTTTTGATTCCTCTTAAAAACGACCCACCGAAGAAGATACAGAGAGCAGCGTCTCCGCCGGAGAGTCCGCCGCCGCCGATCATAACTCCGGTGGAGGACGATGGTTCCAGCTCTTCTAAGAAATGGGTTATTGTTGGTGTCACGGTTGGTGTTGTTTTGGTACTCTTAGTGGTTCTCCTTGTGTTTTTCCTCTGTTTCTATCGCCGCCGGAGGGCGGCTCCGCCGCCGGAGGTTAAGGCTTTCTCGGATTCCACCACCAAGAAGATGTCGGATATTACCCCAACAACCCAATCATGGTCTCTTTCTTCTGAGGGGATTCGTTATGCTATTGAGTCTTTGACTGTGTACAAGTTTGAGGAGTTGCAGAATGCTACAGGGTTTTTCAGTGAAGAGAATAGGGTTAAAGGGTCTGTTTATAGAGCTTCTTTCAAGGGTGATGATGCTGCTGTTAAGATTCTTAAAGGGGATGTGTCTGCTGAGATTAACATTTTGAAGAGGATTAACCATGCTAATATTATAAGGTTGTCTGGTTTTTGTGTCTACAAAGGTAACACCTATCTTGTGTATGAGTTTGCTGAGAATGATTCTCTTGATGATTGGCTTCATTCTGAGAAGAAGTATCAGAATTCTATGTCTCTGAGTTGGACTCAGAGAGTTCAGATTGCTCATGATGTTGCTGATGCACTCAATTACCTTCATAATTATACTAACCCTCCTCATATTCATAAGAATTTGGAAAGTGGTAATGTTCTTTTGGATGGAAGTTTTAGAGCTAAAGTTTCAAACTTTGGGTTAGCAAGAGCTATGGAGAATCAAGGAGGGGATGAGGGGTTCCAATTGACAAGGCATGTGGTGGGGACTCAAGGTTACATGGCACCTGAGTATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTTCATTTGGGGTTGTGATTTTGGAGCTTCTTTCAGGAAGAGAGGCTGTTAGTGGGGAGAAGAATGGATCAGGGGAGAAGCTTCTGTCAGCAACTGTGAGTCAAGTGCTTGAAGGAGAGAATGTTAGGGAGAAACTTAGAGGTTTCATGGATCCAACTTTGAGAGGTGAATACCCTTTGGATCTGGCATATTCCATGGCAGAGATTGCCAAACGCTGTGTTGCTCGTGACCTCAATTCACGACCAAACATTTCTGAGGTTTTCATGATTCTGTCTAAGATTCAATCCTCTACACTGGATTGGGATCCATCTGATGAGTTTGAACGGTCCAGATCTGTTACCCAAATATCTGATAGCAGATAG 1983 0.4392 MMLWTTTTTTIPLLLFLVVVITFSIPETQAQQEYVNNKQLDCENEYNSTKGNLCNSIPSCQSYLTFKSSPPEYNTPTSISYLLNSKPSLIATSNNITDVDPISTDTMITIPIDCSCSGKYYQHNASYTLKKKGETYFTIANNTYQALTTCQALIAQNTYAVRNLVAGDNLTVPLRCACPTKKQSDAGFKYLLTYLVSQGELVSSIGDIFGVDEQSILDANELSSSSSVFYFTPLLIPLKNDPPKKIQRAASPPESPPPPIITPVEDDGSSSSKKWVIVGVTVGVVLVLLVVLLVFFLCFYRRRRAAPPPEVKAFSDSTTKKMSDITPTTQSWSLSSEGIRYAIESLTVYKFEELQNATGFFSEENRVKGSVYRASFKGDDAAVKILKGDVSAEINILKRINHANIIRLSGFCVYKGNTYLVYEFAENDSLDDWLHSEKKYQNSMSLSWTQRVQIAHDVADALNYLHNYTNPPHIHKNLESGNVLLDGSFRAKVSNFGLARAMENQGGDEGFQLTRHVVGTQGYMAPEYIENGLITPKMDVFSFGVVILELLSGREAVSGEKNGSGEKLLSATVSQVLEGENVREKLRGFMDPTLRGEYPLDLAYSMAEIAKRCVARDLNSRPNISEVFMILSKIQSSTLDWDPSDEFERSRSVTQISDSR. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00713 660 ProSiteProfiles LysM domain profile. 192 236 IPR018392 -
Seca8g00713 660 ProSiteProfiles Protein kinase domain profile. 357 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00713 660 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 15 644 - -
Seca8g00713 660 Gene3D Transferase(Phosphotransferase) domain 1 425 652 - -
Seca8g00713 660 Pfam LysM domain 194 237 IPR018392 -
Seca8g00713 660 Pfam LysM domain 131 173 IPR018392 -
Seca8g00713 660 MobiDBLite consensus disorder prediction 249 263 - -
Seca8g00713 660 SMART LysM_2 193 237 IPR018392 -
Seca8g00713 660 SMART LysM_2 126 173 IPR018392 -
Seca8g00713 660 Pfam Protein kinase domain 388 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00713 660 SUPERFAMILY Protein kinase-like (PK-like) 341 628 IPR011009 -
Seca8g00713 660 FunFam PTI1-like tyrosine-protein kinase 3 425 645 - -
Seca8g00713 660 Gene3D Phosphorylase Kinase; domain 1 334 424 - -
Seca8g00713 660 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00713 Seca-Chr8 8847007 8848989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00713 8 653 Receptor kinase-like Gene Family AT2G33580 54.030 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca8g00713 Pkinase 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00713 - - gmx:100818534 973.385