Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00708 ATGGACATGAACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTTTACCTCTGAACAACAACAACAATTCTGGTCATCGCACTAGTGATGACAGAAGGGTATCTCTCTTGAGCAACTCTCAAAATCATAACAACTACAGCCATCACCATCACCAGCAGCAGGATCACCACAACACTGCCAGTGTTAGGGATAAAATCATGGCACATCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTTAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTAGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCTCTGAATGGTGCATCATCAGGAGGAGGAAGAACAGGAAGTGGTTCTATAGGTGAAGATCCAGCACTTGACCAGTTCATGGAGGCTTATTGTGAGATGCTTATCAAGTATGAGCAAGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCTTTTCAAGAATTGAGTGTCAGCTTAAAGCTCTAGCAGTTTCAACAGACTTTGGTGATGTGGTAATTAATTTGAAAGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGATAACAACCTAGATACTCAAGTTGAAGATAGGGAACTAAAAGTCCAGCTTTTGCGTAAGTATAGTGGATATCTAGGAAGCCTCAAGAAGGAGTTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTAGGCAGCAGCTACTTGATTGGTGGAACAGGCATTACAAATGGCCTTACCCATCGGAATCACAAAAGCAAGCACTTGCAGAATCCACAGGCCTAGATCTGAAGCAGATCAACAACTGGTTCATCAATCAAAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAATTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATATCATGTGCAAGCCATTTCCCATGGATGCCATGCCTATGCTTCTTTAA 969 0.419 MDMNMMNMETNRKFLSLPLNNNNNSGHRTSDDRRVSLLSNSQNHNNYSHHHHQQQDHHNTASVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESLNGASSGGGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSTDFGDVVINLKGQSESSSQNEVDVHDNNLDTQVEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENIMCKPFPMDAMPMLL. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00708 322 SUPERFAMILY Homeodomain-like 228 300 IPR009057 -
Seca8g00708 322 ProSiteProfiles ELK domain profile. 206 226 IPR005539 GO:0003677
Seca8g00708 322 Pfam Homeobox KN domain 246 285 IPR008422 GO:0003677|GO:0006355
Seca8g00708 322 Pfam KNOX2 domain 120 166 IPR005541 GO:0003677|GO:0005634
Seca8g00708 322 SMART KNOX2_2 117 168 IPR005541 GO:0003677|GO:0005634
Seca8g00708 322 SMART ELK_2 206 227 IPR005539 GO:0003677
Seca8g00708 322 Gene3D - 224 297 - -
Seca8g00708 322 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Seca8g00708 322 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Seca8g00708 322 ProSiteProfiles 'Homeobox' domain profile. 226 289 IPR001356 GO:0003677
Seca8g00708 322 MobiDBLite consensus disorder prediction 41 61 - -
Seca8g00708 322 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 296 - -
Seca8g00708 322 SMART HOX_1 228 293 IPR001356 GO:0003677
Seca8g00708 322 Pfam ELK domain 206 227 IPR005539 GO:0003677
Seca8g00708 322 CDD homeodomain 238 290 IPR001356 GO:0003677
Seca8g00708 322 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00708 Seca-Chr8 8754186 8759146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00708 63 316 Homeobox Transcription Factor Family AT1G62360 65.267 6.74e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca8g00708 KNOX2 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00708 - - gmx:100791704 494.967