Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00685 ATGTCAGATGACATGCTCGTGCATTTCTCGTCCAACTCTTCCAACCAATCGGACCAGTCTCTGCCTACAAAGATTGCAAAGCTGGAAGCTCGAATGGTGGGCAAAGGTTCTTCCACCGCTGCTCAGCCTCAGCAGTCAGGTTGGTCCTCTGTTCCTTCAGCTGGGAAATTCGGTGGAGCTGCTGAGGATTTGCCTGAACCATCCACATCCAGTGATTCTGATGATGATAATGGTGGGGAATTCCTAATTCAAGCCAACACACAGAAGCGCCAGAAACTTCAAGAAGCTGATAACTCTAATGTTTTTGAACGTGTTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGAGGCCATGGAGACAAAAGTTAATGTTGATGTGAACAGAAAGAAACATGGTCGTGGAAGAGGGGGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAGGGTGAATGATCAAACCAGAACACAAATATCTCCTCCAACTGTTTTGGCTTCTAATGGTCAGATTGAGAATGTACACCATAAAGATGGCAGACTGAAAGATCAGTTTCATAGTGATAATTTTTCTTCATCAGAGGAGGAGGTTGCATCTCTACGTGCAAAAGTTGTTGCATTGGAGGAGGACTTGCGTAAATCAAAGCACGAAGCCTCTGATTATCAGAATCTTTGTCGACAGCTAGAAAAGGAACTTAATGACCTGAAGGATCAGGAACAGCAAATGAAGCCCAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTCTCAAAGTCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTCGGTGTAATCAGAGCCGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATGCCCAGCTTAGACAACTAATAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAATTATTTAAGAAAAAACATTCTGATAAGGGTGATGGAACAGATGCAGAGGCTGGATTACCGGAAGATGTTCTCATTCATGATGAAATCTATAAATCTCGACTAGCTAGCATTAAACGAGAAGAAGAAACTATTTTGCGGGAGAGGGATCGCTATGAACTAGAGAAGGGGAGGTTGATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCGCTTCTAAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCAATCCGGGAGTATAATATTCACAAGACGCTGGTCCATCGTCACATTGTTCGATTATGGGACATTTTTGAGATTGATCACAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGTAAGGATCTTGATGCTATCCTTAAAGCAACACCTATATTGCCTGAGAGGGAGGCTAGGGTCATTCTAGTTCAGGTTTTTCAAGGCCTTATTTACATGAATAAAAGAACGCAGAAGATTATCCATTATGATTTAAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGAGTTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTAA 1731 0.4281 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTAAQPQQSGWSSVPSAGKFGGAAEDLPEPSTSSDSDDDNGGEFLIQANTQKRQKLQEADNSNVFERVEVVTEGRQTSLEAMETKVNVDVNRKKHGRGRGGSGSGRGRGSRVNDQTRTQISPPTVLASNGQIENVHHKDGRLKDQFHSDNFSSSEEEVASLRAKVVALEEDLRKSKHEASDYQNLCRQLEKELNDLKDQEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLRQLIETKEAIERQRKLFKKKHSDKGDGTDAEAGLPEDVLIHDEIYKSRLASIKREEETILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAILKATPILPEREARVILVQVFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYW. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00685 576 MobiDBLite consensus disorder prediction 145 159 - -
Seca8g00685 576 MobiDBLite consensus disorder prediction 1 98 - -
Seca8g00685 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Seca8g00685 576 MobiDBLite consensus disorder prediction 1 23 - -
Seca8g00685 576 Pfam Protein kinase domain 402 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00685 576 Gene3D Transferase(Phosphotransferase) domain 1 392 576 - -
Seca8g00685 576 Coils Coil 188 243 - -
Seca8g00685 576 MobiDBLite consensus disorder prediction 37 52 - -
Seca8g00685 576 MobiDBLite consensus disorder prediction 125 159 - -
Seca8g00685 576 Coils Coil 352 386 - -
Seca8g00685 576 SUPERFAMILY Protein kinase-like (PK-like) 391 575 IPR011009 -
Seca8g00685 576 ProSiteProfiles Protein kinase domain profile. 401 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00685 576 MobiDBLite consensus disorder prediction 71 95 - -
Seca8g00685 576 PANTHER MIXED LINEAGE PROTEIN KINASE 11 576 - -
Seca8g00685 576 SMART serkin_6 401 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00685 576 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524
Seca8g00685 576 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00685 Seca-Chr8 8404210 8414227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00685 384 576 MAP Kinase Kinase Kinase AT3G13530 30.457 4.78e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Seca8g00685 Pkinase 3.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00685 K08864 - gmx:100805168 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00685 8 8404210 8414227 Seca8g00685 8 8404210 8414227 ECH