Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00682 ATGTACATTAAGCAGGTTGTAATTGAAGGTTTTAAGAGTTACCGAGAGCAAATCGCCACAGAGGCTTTCAGTCCTAAAGTTAATTGCGTTGTTGGTGCTAATGGATCTGGGAAGACAAACTTTTTCCATGCCATTCGTTTTGTGTTGAGTGATCTCTTCCAGAATCTACGCAGCGAAGATAGACATGCACTACTCCATGAAGGAGCTGGACACCAGGTTTTATCTGCATTTGTGGAGATTGTGTTTGATAATTCAGACAATCGTATCCCGGTTGACAAGGAAGAAGTGCGGTTGCGCCGGACTATTGGTTTGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATAACTAAAACTGAAGTGATGAATTTATTGGAAAGTGCTGGGTTCTCTCGCTCAAATCCTTATTATGTTGTGCAACAAGGAAAGATAGCATCACTAACCTTGATGAAAGACTCTGAACGACTGGATTTGCTGAAGGAAATTGGTGGTACTAGAGTGTATGAGGAACGGCGTCGTGAAAGTTTGAAAATAATGCAGGAAACTGGTAATAAAAGAAAGCAAATAATCCAAGTTGTACAGTATTTAGATGAGAGATTGAGGGAACTAGATGAGGAGAAAGAGGAACTTAGAAAATATCAGCAGCTTGACAAGCAGAGAAAATCCTTGGAATATGCTATTTATAGCAAAGAAGTTCAAGATGCTCAGCAAAAACTTACAGAGATAGAAGAAGCTCGGACCAAGGTTTCTGAAACATCAGCAAAGAAGTATAATGACGTTCTTGACGCACATGAAAAATCCAAAGATTTAGAGAATACATTGAAAGATGTAACAAAAGAACTCCAAAACTTTAACAAAGAGAGAGAAGTTATTGAAAAGCGACGAACAGCGGCATTAAAGAAGCACACAGAGCTTGAGCTTGATGTCAAAGACTTACAAGAGAAGATCTCTGGAAATATCCGAGCCAAAGAAGATGCTGCAAGACAACTTGAGATACTGGAGAAAGAAATTCAAGATTCAATGGATGAGCTGGACAAAATCAGTCCATTATATGAGGATCAAGTTAAGAAAGAAAAAGACATTACCAAGCGAATAATGGAGCGTGAGAAGAAACTTAGTATACTTTATCAAAAGCAAGGACGTGCAACCCAGTTTTCGAGTAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGATGATCTTGAAAGGGTGCTTTCTTCAAACACAGGGCAGGAGCAAAAGCTTATGGAAGAAATTGACCGGCTTAATGGTGAACTACGCGATTGTGATGAGTACATTAAGAGCCGTAAATCAGATATTACCACTTTAGAATCTCTCATTGCTCAGTCACGTGAAGGGTTTAATTATCATAAAGTAGAAAGAGACAAGTTGCAAGATGAGAGGAAGTCCCTATGGGGCAAAGAGAATGAGCTTACTGCTGAAATTGATAAGCTGAGAGCAGAAGTTGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCTGGTGATGTGAGAAGAGGGTTGAATTCAGTTCGGAAGATCTGCAGGGAGTATAACATTTCTGGAGTTCATGGTCCGATTATTGAGTTGCTGAATTGTGATGAGAAATTTTTCACTGCAGTTGAAGTTACTGCAGGAAACAGCTTATTTCATGTGGTTGTTGAAAATGATGACAAGTCAACCCAGATAATTAGACATCTTAATTCACAGAAAGGTGGCCGAGTTACATTTATTCCACTTAACAGAGTAAAGGCTGCACACATCACTTATCCACAGAGTTCTGATGTCATACCTCTTTTGAAGAAATTAAATTTTAAACTTGAGCATACTCCGGCATTCAGTCAGGTATTTTCTAGAACAGTTATCTGCAAGAACCTGGATGTGGCTTCAAGGGTTGCTCGAACTGATGGTCTGGACTGCATAACACTGGAAGGTGATCAAGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTATGATCACAGGCGATCAAAATTGAAGTTTATGAATATCATTAAGCAGAATACAGAAAATATTCGCAAGAAGGAGGAGGAATTGGATAAAGTTAGATTTAGTCTACAAGAGATAGATCAAAAGATTAATGAACTTGTTGCTGAGCAGCAGAAGATTGATGCCAAGCGTGCTCATGACAAATCAGAGTTGGAACAGCTTAAGCAGGACATTGCTAATTCTAACAAGCAGAAGCAATTGATTTCTAAAGCAATTGCAAAGAAGGATAAGTCACTTGTGGATGTCCAAAATCAGATTGAACAGCTTAAGGCTAGTATGGCAATGAAAAAAGCAGAGATGGGCACAGAGCTCATTGATCATTTAACGCCAGAGGAAAAAAAACTTTTGTCAGATTTGAACCCTGAAATCAAAGACCTTAAAGAGAAGCTTGTTGCTTGCAAGAATGATCGCATTGAGACTGAAGCACGGAAAGCCGAGCTGGAAACTAATCTAACTACTAACCTTAGGAGAAGAAAACAAGAGTTGGAGGCTGTAATATCATCTGTGGATGCTGACTCTTTGGTTGTTGATGCTGAATTGAAGGGGCAGGAACTTAGTGATGCTAAAATATTGGTTGATGATGCATCAGGGCAGCTCAGAAGAGTTTCTGAAAGTATAAATGATCGAACAAGGCAAATTAAAAAGATCAAAGATGAAATGAATAAATTGAAGTCTTTGGAGGATGAGTATGAAAGAAAGCTTCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTTAGTAAAAAAAATATATATTCTGCTAAAGAAGAGGAATATACCAAGAAAATAAGGGAACTGGGCCCATTGTCGTCAGATGCTTTTGAGACGTACAAACGGAGGAGTGTTAAAGATTTGCAAAAAATGCTGCATAGGTGCAATGAGCAATTGCAACAGTTTAGTCATGTAAACAAGAAAGCACTTGATCAGTACATAAATTTTACAGAACAAAGAGAAGAACTTCAGAAAAGGCAAGCTGAACTTGATGCAGGAGATGAGAAAATTAGAGAACTAATATCAGTGCTAGATCAACGGAAGGATGAATCAATAGAACGCACTTTCAAAGGTGTTGCTAGGCATTTTCGAGAAGTATTTTCTGAACTTGTGCAGGGGGGCCATGGTCACCTGGTTATGATGAAGAAGAAGGATGGTGATCATGATGATGATGATCAAGATGAGGATGGTCCTCGTGAAGCAAATCCAGAGGGGAGAGTAGAGAAGTACATTGGAGTGAAAGTGAAGGTCTCTTTTACTGGGCAAGGGGAGACACAGTCCATGAAGCAGTTGTCTGGGGGTCAAAAAACTGTTGTTGCCCTAACACTTATCTTTGCCATACAGCGATGTGATCCTGCCCCCTTTTATCTATTTGATGAGATTGATGCAGCACTGGATCCACAGTACAGAACTGCTGTTGGAAGTATCCATTTTATTATGTTCACTACCCCGTCATGTCAAATGACTGGTCCTGCATTTCTTCCATCCGTATTTACTGCATGCTGCATCTACAATCTTCACTTTTCTTTTTTATTTTTTTTCAAGTATTGCCTGCATATATTCCTCATAGCATGA 3576 0.3912 MYIKQVVIEGFKSYREQIATEAFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLRELDEEKEELRKYQQLDKQRKSLEYAIYSKEVQDAQQKLTEIEEARTKVSETSAKKYNDVLDAHEKSKDLENTLKDVTKELQNFNKEREVIEKRRTAALKKHTELELDVKDLQEKISGNIRAKEDAARQLEILEKEIQDSMDELDKISPLYEDQVKKEKDITKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVLSSNTGQEQKLMEEIDRLNGELRDCDEYIKSRKSDITTLESLIAQSREGFNYHKVERDKLQDERKSLWGKENELTAEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICREYNISGVHGPIIELLNCDEKFFTAVEVTAGNSLFHVVVENDDKSTQIIRHLNSQKGGRVTFIPLNRVKAAHITYPQSSDVIPLLKKLNFKLEHTPAFSQVFSRTVICKNLDVASRVARTDGLDCITLEGDQVSKKGSMTGGFYDHRRSKLKFMNIIKQNTENIRKKEEELDKVRFSLQEIDQKINELVAEQQKIDAKRAHDKSELEQLKQDIANSNKQKQLISKAIAKKDKSLVDVQNQIEQLKASMAMKKAEMGTELIDHLTPEEKKLLSDLNPEIKDLKEKLVACKNDRIETEARKAELETNLTTNLRRRKQELEAVISSVDADSLVVDAELKGQELSDAKILVDDASGQLRRVSESINDRTRQIKKIKDEMNKLKSLEDEYERKLQEEAKELEQLLSKKNIYSAKEEEYTKKIRELGPLSSDAFETYKRRSVKDLQKMLHRCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREANPEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGSIHFIMFTTPSCQMTGPAFLPSVFTACCIYNLHFSFLFFFKYCLHIFLIA. 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00682 1191 Coils Coil 870 925 - -
Seca8g00682 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 298 IPR027417 -
Seca8g00682 1191 CDD ABC_SMC3_euk 3 166 IPR041741 GO:0005524|GO:0016887
Seca8g00682 1191 Gene3D - 595 659 - -
Seca8g00682 1191 SMART SMC_hinge_2 522 634 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g00682 1191 SUPERFAMILY Smc hinge domain 474 678 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g00682 1191 Coils Coil 260 315 - -
Seca8g00682 1191 Coils Coil 323 343 - -
Seca8g00682 1191 Gene3D - 985 1156 IPR027417 -
Seca8g00682 1191 Coils Coil 218 252 - -
Seca8g00682 1191 FunFam Structural maintenance of chromosomes 3 1 197 - -
Seca8g00682 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 966 1141 IPR027417 -
Seca8g00682 1191 Coils Coil 680 770 - -
Seca8g00682 1191 Coils Coil 794 821 - -
Seca8g00682 1191 PIRSF SMC 1 1135 IPR024704 GO:0005524|GO:0016887
Seca8g00682 1191 MobiDBLite consensus disorder prediction 1047 1072 - -
Seca8g00682 1191 Pfam SMC proteins Flexible Hinge Domain 522 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Seca8g00682 1191 Pfam RecF/RecN/SMC N terminal domain 2 1142 IPR003395 -
Seca8g00682 1191 Coils Coil 193 216 - -
Seca8g00682 1191 Gene3D - 1 178 IPR027417 -
Seca8g00682 1191 Coils Coil 476 496 - -
Seca8g00682 1191 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1143 - -
Seca8g00682 1191 Gene3D - 475 594 - -
Seca8g00682 1191 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00682 Seca-Chr8 8350772 8378771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00682 1079 1173 Structural Maintenance of Chromosomes family AT5G15920 28.846 8.61e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00682 K06669 - gmx:100810448 1996.48