Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00672 ATGATTAGGAGTACCACTACCACACTTTTATTATTGGCTATTTCCTTCTTGTATGGTGCTTCTGCTCTGCTCTCTGATGGGGTGACCCTGTTGTCACTCTTGACAAGCTGGACCTTTGTTCCTTCTATCATCAGCTCAAGCTGGAATGCCTCTGATTCCATTCCATGTTCATGGGTTGGAGTTCAATGCGACCATGCCCACAATGTGATCTCTCTTAACCTCACTCATCAAGGGATTTTTGGTCAACTTGGACCACAAGTTGGAAACTTGTATCACTTGCAGACCTTTGTGTTGTTGGGTAATGGTTTCTCAGGAAAAGTACCCTCAGAGTTAAGCAACTGTAGTTTGCTCCAGTATTTAGACCTTTCTGGAAACAACTTCAGTGGACAGATACCATATAGCTTTAAGAAGTTGCAAAATTTACAGTATTTGAGCTTGTCTTCTAATCTGTTGACCGGTGAAATTCCAGTCAGTATTTGGAGAATTACAAGTCTTAAGCACATATTGGTTCACAACAACAGCCTCTTTGGGGAGCTACCTTTGGAGATGACAAAGCTCAAGCATCTAAAAAACATCTCATTGTTTGACAACCAGTTCTCCGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCTTAGTGAAGTTGGACTGTATGAATAATAAGTTCACTGGTAATATCCCACCCAATCTTTGCTTTGGAAAGCAATTGATTGAGCTCAATATGGGAATTAATCAACTTCAAGGTGGCATACCTTCTGATGTAGGGAGATGTGCAACTCTAAGGAGGTTGATTCTCAAAGAAAATAATTTCACTGGGTCTCTTCCGGATTTTGAAAGTAATCCAAACCTCATATACATGGACATAAGCAAGAACAATATCAGTGGACTAATTCCATCAAGTTTGGGAAATTGCAGAAACCTCACTTACATTAATTTGTCAATGAACAATTTTACTGGGCCAACACCATCTCAGTTTGGAAAGCTTGTGAATCTTGTGATTTTGGATCTTGCTCACAACAACTTGGAAGGTACTTTGCCACCTCAGCTATCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGTTCACTCCCATCAAGTTTGAGTAGTTGGACAGGGATAACCACATTGATTTTAAGAGAGAATCATTTTTCAGGGGGTATCCCGGACTTTTTGGCAAAATTTAACAACCTTCGTGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCAATCAATAGGAACATTGCAGAATCTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGACAGGTGACATTCCTGCAGAAATTAGCAATCTAAAACTGCTGCAAAGTCTTGATATATCCTTGAACAATTTGACAGGAAAGCTAGATTTTCTTGGAAGTCTTATTTCATTAATTGAGGTCAATATTTCTTACAATTTCTTTGATGGTCCTGTACCTATGGGGCTAATGAAGTTATTGAATTCCTCACCATCATCATTCATGGGAAATCCTCTCCTATGTGTTAGTTGCTTGAGTTGCATCAGAACTATTTATGTGAAGCCATGTGTCTACAAATCAAGTGATCACAAAGGTATCAGTAAATTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTTGTTTCTGCCATGCTTCTAATAACAATTCTAATGTATCTCCGTAGAAAGGAATTGAAAACGAACCACCCTCTTAAGTTTCAGAGTTTTAGTTGGAGGAACACGCCTCTCATTTATGACCAAATAATGGAGGCTACAGAGAACCTAAATGACAGGTATATTATCGGCATAGGAGCCTATGGTGTTGTATACAAAGCCCAGTTGGTTACAGGACATGTTGTTGCTGTAAAGAAGGTTTCATTTGGAAGAAACAAGGAGAAGCGCGCAAGTTCCATGCAAAATGAAATTCAAACCATTGGGACTATTAGGCACCGAAATTTGGTCAAACTCTTTGGCTTCTTCTTTGGACCTAACTATGGTTTAATCATATATGATTACATAGAAAATGGAAGCCTTCATGATATTTTACATGAAATGGAACCCCCACCACCCTTAAAGTGGAATGTCCGGTTTAACATAGCTGTTGGAATTGCTCAAGGACTAGCATATCTGCATTATGATTGTATCCCACCCATAGTGCACCGAGACATCAAACCAAAGAATATACTTCTTGATGCTGATATGGAGCCTCTTATAGCTGACTTTGGCACTGCCCTGTACAGGAACCTGTCTGAGGATTCTAATACTTATTTTGGAACCAGGAGAAGGCTTTCATCCAACGTTGTTGGTACCCCTGGCTATATTGCACCGGAGAATGCATATGCAATAGTTCAGAGCAGAAAGTCTGATGTATATAGCTATGGGGTTGTTTTGCTTGAGCTAATAACCAGAAGGAAAGTATTGATTCAATCTTTGAATAATGAGGCAGAGGTGACCACTTTAATACGTTGGGCTAGATCTGTATGGCTGGAAACAGGCAAAATTGAGAAGATTGCTGATCCATATCTAGCAAGTGCATTCCCCAATTCAGCAGCACTAGCCAAGCAGGTCACTGCATTGTTTTTGTTGGCATTACAATGCACAGAAAGGGAACCACATCAGAGACCGACCATGAAGGATGTTATTGGCTTTTATAACGTGTTCCAGTGGAAACTCATGTCTAGACCTGCAACCGGTATTGATGGACTTGTAATTAAACCAATGGGCAGCGGTAAGATTCAGGTTGAAAAAGTAGTGGTAGCTGCTCTAATTGTTCCAAAAATAACCTATGCATGGTCTTGGTGGTTCTACCTTCCCTCCATCACTGGTCCAGTAGTTACCACAGCCTTCAATTGGTTTTTCCTCTCACGTTGGGTTCAATATATGCACCAGCAGAAAGCATTGTATTCACAGCCCAAATCATACTTTATAAACACCAAATCAAGGCCACCCACCAACTCAGTGAGTAGCCATGGAAGAATTCCAAAGGAAAGGTTCTTTAAAGCCAATACTCTCCAATCTTTGGGTCATGGAGAAAGAGATGTCCATAATTCTAAATGTCTAAATTAA 3081 0.3979 MIRSTTTTLLLLAISFLYGASALLSDGVTLLSLLTSWTFVPSIISSSWNASDSIPCSWVGVQCDHAHNVISLNLTHQGIFGQLGPQVGNLYHLQTFVLLGNGFSGKVPSELSNCSLLQYLDLSGNNFSGQIPYSFKKLQNLQYLSLSSNLLTGEIPVSIWRITSLKHILVHNNSLFGELPLEMTKLKHLKNISLFDNQFSGVIPQSLGINSSLVKLDCMNNKFTGNIPPNLCFGKQLIELNMGINQLQGGIPSDVGRCATLRRLILKENNFTGSLPDFESNPNLIYMDISKNNISGLIPSSLGNCRNLTYINLSMNNFTGPTPSQFGKLVNLVILDLAHNNLEGTLPPQLSNCTKMDRFDVGFNFLNGSLPSSLSSWTGITTLILRENHFSGGIPDFLAKFNNLRELQLGGNLFGGKIPQSIGTLQNLFYGLNLSANGLTGDIPAEISNLKLLQSLDISLNNLTGKLDFLGSLISLIEVNISYNFFDGPVPMGLMKLLNSSPSSFMGNPLLCVSCLSCIRTIYVKPCVYKSSDHKGISKFQIVMIELGSSIFVSAMLLITILMYLRRKELKTNHPLKFQSFSWRNTPLIYDQIMEATENLNDRYIIGIGAYGVVYKAQLVTGHVVAVKKVSFGRNKEKRASSMQNEIQTIGTIRHRNLVKLFGFFFGPNYGLIIYDYIENGSLHDILHEMEPPPPLKWNVRFNIAVGIAQGLAYLHYDCIPPIVHRDIKPKNILLDADMEPLIADFGTALYRNLSEDSNTYFGTRRRLSSNVVGTPGYIAPENAYAIVQSRKSDVYSYGVVLLELITRRKVLIQSLNNEAEVTTLIRWARSVWLETGKIEKIADPYLASAFPNSAALAKQVTALFLLALQCTEREPHQRPTMKDVIGFYNVFQWKLMSRPATGIDGLVIKPMGSGKIQVEKVVVAALIVPKITYAWSWWFYLPSITGPVVTTAFNWFFLSRWVQYMHQQKALYSQPKSYFINTKSRPPTNSVSSHGRIPKERFFKANTLQSLGHGERDVHNSKCLN. 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00672 1026 Gene3D Transferase(Phosphotransferase) domain 1 678 895 - -
Seca8g00672 1026 Gene3D Ribonuclease Inhibitor 24 173 IPR032675 -
Seca8g00672 1026 ProSitePatterns Protein kinases ATP-binding region signature. 606 629 IPR017441 GO:0005524
Seca8g00672 1026 SMART serkin_6 600 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00672 1026 FunFam Leucine-rich repeat receptor-like protein kinase 25 181 - -
Seca8g00672 1026 SUPERFAMILY Protein kinase-like (PK-like) 578 887 IPR011009 -
Seca8g00672 1026 SUPERFAMILY L domain-like 26 278 - -
Seca8g00672 1026 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 564 677 - -
Seca8g00672 1026 SUPERFAMILY L domain-like 211 520 - -
Seca8g00672 1026 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 678 893 - -
Seca8g00672 1026 CDD STKc_IRAK 606 886 - -
Seca8g00672 1026 Gene3D Ribonuclease Inhibitor 281 519 IPR032675 -
Seca8g00672 1026 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 194 520 - -
Seca8g00672 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Seca8g00672 1026 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 236 886 - -
Seca8g00672 1026 Gene3D Ribonuclease Inhibitor 174 280 IPR032675 -
Seca8g00672 1026 Pfam Leucine rich repeat 260 318 IPR001611 GO:0005515
Seca8g00672 1026 Pfam Leucine rich repeat 133 175 IPR001611 GO:0005515
Seca8g00672 1026 Gene3D Phosphorylase Kinase; domain 1 562 677 - -
Seca8g00672 1026 ProSiteProfiles Protein kinase domain profile. 600 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00672 1026 SMART LRR_typ_2 329 353 IPR003591 -
Seca8g00672 1026 SMART LRR_typ_2 138 162 IPR003591 -
Seca8g00672 1026 SMART LRR_typ_2 401 425 IPR003591 -
Seca8g00672 1026 Pfam Protein kinase domain 605 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00672 1026 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00672 Seca-Chr8 8237759 8241243 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00672 65 886 Receptor kinase-like Gene Family AT1G73080 45.921 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00672 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00672 - - tpra:123924637 1103.58