Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00670 ATGACTAGAACTAGGAGTATCGCTATCACACTCTTGTTAGTTATTTCCTTCTTGCATATTGCCTCTGCTCTGGTCTCTGATGATGGGGTGACTCTGTTATCGCTCTTGAAAAGCTGGACCTTTGTTCCTTCCAACATCAGCTCAAGCTGGAACACCTCTGATTCTATTCCATGCTCATGGGTTGGAGTTCAATGCGACCATGCCCACAATGTGATCTCCCTTAACCTAACTCATCAAGGTATTTTTGGTCAACTTGGTACAGAAATTGGAAATTTGTATCACTTGCAGACCCTTGTGTTGTTGGGTAATGGTTTCTCAGGAAAAATACCTTCAGAGTTAAGCAACTGTAGTTTACTTGTGTATTTAGACCTTTCTGGAAACAACTTCAGTGGACAGATACCATATAGCTTTAAAAAGTTGCAAAATTTACAGTATTTGAGCTTGTCTTCTAATCTGCTGACTGGTGAAATTCCAGATTCCTTGTTTCAAATTTCTTCTCTGGAAGAACTGAGCCTGCATAGTAACCTTCTTAGTGGTCCTGTCCCAACCAATATTGGGAACTTGACCAAACTATTGAGGTTGTATCTATATGGTAATCAGTTGTCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAAATTAGAGGACCTTGAATTGTCTTTCAACCGTTTGACAGGTGAAATTCCAGTCACTGTTTGGAGAATTCCAAGTCTTAAGCACATCTTGGTGCACAACAACAGCCTTTTTGGGGAACTTCCTTTGGAGATGACAAAGCTCAAGCATCTAAAAAATATCTCATTGTTTGACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTGGGGATCAACAGCAGCTTGGTGAAGTTGGACTGTATGAATAATAAGTTCACTGGTAATATCCCACCCAATCTTTGCTTTGGAAAGCAATTGATTGAGCTCAATATGGGAATTAATCAACTTCAAGGTGGCATACCTTCTGATGTAGGGAGATGTGTAACTCTAAGGAGGTTGATTCTCAAAGAAAATAATTTCACTGGGTCTCTTCCGGATTTTGAAAGTAATCCAAACCTCATATACATGGACATAAGCAAGAACAATATCAGTGGACCAATTCCATCAAGTTTGGGAAATTGCAGAAACCTCACTTACATTAATTTGTCCATGAACAAATTTACTGGGCCAATACCATCTCAGTTTGGAAAGCTTGTGAATCTTGTGATTTTGGATCTTGCTCACAACAACTTGGAAGGTACTTTGCCACCTCAGCTATCAAATTGTACTAAAATGGATTGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCACTCCCATCAAATTTGAGTAGTTGGACAGGGATAACCACGTTGATTTTAAGGGAGAATTATTTTTCAGGGGGTATCCCGGACTTTTTGGCAAAATTTAACAACCTTCGTGAGTTACAATTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCAATCAATAGGATCATTAAAGAATCTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGACAGGTGACATTCCCGCAGAAATTAGAAATCTGGAACTGCTGCAAAGTCTGGATATATCCTTGAACAATTTGACAGGAAAGCTAGATTTTCTTGAAAGTCTTGGTTCATTAATTGAGGTCAATATTTCTTACAATTTCTTCTATGGTCCTGTACCAGAAACAACAGGGCTAATGAAGGCATTGAATTCCTCACCTTCATCATTCATGGGCAATCCTCTTCTTTGCGTTAGTTGCTTGAATTGCATTAAAACTAGTTATGTGAAGCCTTGTGTCTACATATCAACTGATCACAAAGGTATCAGTAAAATTGGAATTGTGATGATAGAATTGGGATCCTCAGTAATTATTTCTGCCCTGCTGCTAATAATAATTCGAATGTATCTCCTCGGAAGATATAAGCAGGAATTCAATGAGAAATGGGGGATTGATTCTGCCTCTGATTACCCGGAGTCATTTATTGAAAGAGGAGGAGGACGGAGGATTGGATTCATGTATGAGCGTGAAGTGAACATCTTAGCTGAAAAGAAGCCATCTGCCCTTCAGGACCTAGTGTTGAAGGCTACAAAGAACCTAGATGATCAGTATATTGTTGGCATAGGAGCACATGGTATTGTGTATAAAGCCCAACTAGGTGAACTGGTTTTTGCTGCAAAGAAGGTTGCATTTGCAAGGAACAAGCAAAGGTGCCTAAGTATCATGCACAAAGAAATTAAAGTCCTTGGGATGTTTAAGCATCGGAATTTGATCACTTATGCAGACTACTGGTTTGGAGAGGACTATGGTTTAATCTTATATGAGTTTATGGAAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGAAACCCCCACCAGCCTTAACATGGAATGACCGGTTTAAGATAGCTGTTGGAATTGCTGAAGGACTAGCATATCTGCATTATGATATTAGCCCACCCATAGTGCACAGAGACATCAAACCAAAGAATATACTTCTTGATGCTAATATGGAGCCTCTTATAGCTGATTTTGGCACTGCCCTGTACAGGAACCTGTCTGAGGATTCTAATACTTATTCTGGAACCAGGAAAATGCTATCATCCAACGTTGCTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGCAATAGTTCAGAGCAGAAAGTCTGATGTATATAGCTATGGGGTTGTTTTGCTTGAGCTAATAACCAGAAAGAAAGTAATAATTCAATCTTTGAATAATGAGGCAGAGGTGACCACTTTAATACGTTGGGCTAGATCTGTATGGCTGGACACAGGAAAAATTGAGAAGATTGCTGATCCATATCTAGCAAGTGCATTCCCCAATTCAGTAGCACTAGCCAAGCAGGTCACTGCAGTGTTTTTGTTGGCATTACAATGCACAGAAAGGGAACCACATCAGAGACCGACCATGAAAGATGTTATTGGCTTTTATAAACGGAAAGTGTTCCAGTTGAGGTGTGATTATGTTGTTTATGGTGATGAAGTTGCTGTTGATGTAGCACCACAACCATGTGACTCTCTTAATCTCTTATCTGATGTTCCAGTTGTCAGTATTGACCACCATCTCCATGGTGAAAGTAGTAGTGCTGCAACCCTGAGACAAAGAGAAGTTACATTTAATGTTGGAATCCTTCCTTGGGATGATTGGAAACTCATGTCTAGACCTACAACCAGTATTGGTGGACTTGTCATTAAATCAATAGGCGGCAGTAAGATTCAGGCTGAAAAAATAATGGTAGCTGCTCTAATTGTTCCAAAAATAACCTATGCATGGTCTTGGTGGTTCTACTTTCCCTCCATCACTGGTCCAGTAGTTACCACAGCCTTCAATTGGTTTTTCCTCTCACGTTGGGTTCAATATATGCACCAGCAGAAATCATTGTATTCACAGCCCAAATCATACTTTATAAACACCAAATCCAGGCCACCCACCAACTCTGAGTAG 3489 0.3981 MTRTRSIAITLLLVISFLHIASALVSDDGVTLLSLLKSWTFVPSNISSSWNTSDSIPCSWVGVQCDHAHNVISLNLTHQGIFGQLGTEIGNLYHLQTLVLLGNGFSGKIPSELSNCSLLVYLDLSGNNFSGQIPYSFKKLQNLQYLSLSSNLLTGEIPDSLFQISSLEELSLHSNLLSGPVPTNIGNLTKLLRLYLYGNQLSGTIPSSIGNCSKLEDLELSFNRLTGEIPVTVWRIPSLKHILVHNNSLFGELPLEMTKLKHLKNISLFDNQFSGVIPQSLGINSSLVKLDCMNNKFTGNIPPNLCFGKQLIELNMGINQLQGGIPSDVGRCVTLRRLILKENNFTGSLPDFESNPNLIYMDISKNNISGPIPSSLGNCRNLTYINLSMNKFTGPIPSQFGKLVNLVILDLAHNNLEGTLPPQLSNCTKMDCFDVGFNFLNGSLPSNLSSWTGITTLILRENYFSGGIPDFLAKFNNLRELQFGGNLFGGKIPQSIGSLKNLFYGLNLSANGLTGDIPAEIRNLELLQSLDISLNNLTGKLDFLESLGSLIEVNISYNFFYGPVPETTGLMKALNSSPSSFMGNPLLCVSCLNCIKTSYVKPCVYISTDHKGISKIGIVMIELGSSVIISALLLIIIRMYLLGRYKQEFNEKWGIDSASDYPESFIERGGGRRIGFMYEREVNILAEKKPSALQDLVLKATKNLDDQYIVGIGAHGIVYKAQLGELVFAAKKVAFARNKQRCLSIMHKEIKVLGMFKHRNLITYADYWFGEDYGLILYEFMENGSLHDVLHEKKPPPALTWNDRFKIAVGIAEGLAYLHYDISPPIVHRDIKPKNILLDANMEPLIADFGTALYRNLSEDSNTYSGTRKMLSSNVAGTPGYIAPENAYAIVQSRKSDVYSYGVVLLELITRKKVIIQSLNNEAEVTTLIRWARSVWLDTGKIEKIADPYLASAFPNSVALAKQVTAVFLLALQCTEREPHQRPTMKDVIGFYKRKVFQLRCDYVVYGDEVAVDVAPQPCDSLNLLSDVPVVSIDHHLHGESSSAATLRQREVTFNVGILPWDDWKLMSRPTTSIGGLVIKSIGGSKIQAEKIMVAALIVPKITYAWSWWFYFPSITGPVVTTAFNWFFLSRWVQYMHQQKSLYSQPKSYFINTKSRPPTNSE. 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00670 1162 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca8g00670 1162 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 330 987 - -
Seca8g00670 1162 ProSiteProfiles Leucine-rich repeat profile. 142 164 IPR001611 GO:0005515
Seca8g00670 1162 Gene3D Ribonuclease Inhibitor 333 598 IPR032675 -
Seca8g00670 1162 SMART LRR_typ_2 188 212 IPR003591 -
Seca8g00670 1162 SMART LRR_typ_2 140 164 IPR003591 -
Seca8g00670 1162 SMART LRR_typ_2 403 427 IPR003591 -
Seca8g00670 1162 SMART LRR_sd22_2 188 220 - -
Seca8g00670 1162 SMART LRR_sd22_2 140 172 - -
Seca8g00670 1162 SMART LRR_sd22_2 403 429 - -
Seca8g00670 1162 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 309 597 - -
Seca8g00670 1162 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 24 183 - -
Seca8g00670 1162 SUPERFAMILY RNI-like 266 570 - -
Seca8g00670 1162 SUPERFAMILY L domain-like 47 370 - -
Seca8g00670 1162 ProSiteProfiles Protein kinase domain profile. 704 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00670 1162 Pfam Leucine rich repeat 356 416 IPR001611 GO:0005515
Seca8g00670 1162 Pfam Leucine rich repeat 135 177 IPR001611 GO:0005515
Seca8g00670 1162 Gene3D Ribonuclease Inhibitor 233 332 IPR032675 -
Seca8g00670 1162 Gene3D Phosphorylase Kinase; domain 1 686 780 - -
Seca8g00670 1162 SMART serkin_6 704 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00670 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Seca8g00670 1162 ProSitePatterns Protein kinases ATP-binding region signature. 710 732 IPR017441 GO:0005524
Seca8g00670 1162 Gene3D Ribonuclease Inhibitor 182 232 IPR032675 -
Seca8g00670 1162 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 185 281 - -
Seca8g00670 1162 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 781 995 - -
Seca8g00670 1162 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Seca8g00670 1162 Pfam Protein kinase domain 709 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00670 1162 SUPERFAMILY Protein kinase-like (PK-like) 694 989 IPR011009 -
Seca8g00670 1162 Gene3D Transferase(Phosphotransferase) domain 1 781 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00670 Seca-Chr8 8224665 8228715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00670 68 989 Receptor kinase-like Gene Family AT1G73080 44.468 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00670 Pkinase 2.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00670 - - tpra:123924637 1571.21