Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00656 ATGACAAGGAATAGGAGTATCACTACCACACTTTTTTTGTTGGTTATTTCCTTCTGGAGTGGTGCTTCTGCTACGGTCTCTGATGGGGTGACTCTGTTGTCACTCTTGACACACTGGACCTTTGTTCCTCCTCTCATCAACTCGAGCTGGAATGCCTCTGATTCCATTCCATGTTCATGGGTTGGAGTTCAATGCGACCATGCCCGCAATGTGATCTCTCTTAACCTCACTCATCAAGGGATTTTTGGTCAACTTGGACCACAAATTGGAAACTTGTATCACTTGCAGACCCTTGTGTTGTTGGGTAATGGTTTCTCAGGAAAAATACCTTCAGAGTTAAGCAACTGTAGTTTACTTGTTTATTTAGACCTTTCTGGAAACAACTTCAGTGGACAGATACCATATAGCTTTAAAAAGTTGCAAAAATTACAGTATTTGAGCTTGTCTTCTAATCTGCTGACTGGTGAAATTCCAGATTCCTTGTTTCAAATTCCTTCTCTGGAAGAACTGAGCCTGCATAGTAACCTTCTTAGTGGTCCTGTCCCAACCAATATTGGGAACTTGACCAAACTATTGAGGTTGTATCTATATGGTAATCACTTGTCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAAATTAGAGGACCTTGAATTGTCTTTCAACCGTTTGACAGGTGAAATTCCAGTCAGTGTTTGGAGAATTCCAAGTCTTAAGCACATCTCGGTTCACAACAACAGCCTTTTTGGGGAACTTCCTTTGGAGATGACAAATCTCAAGCATCTAAAAAATATCTCATTGTTTGACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTGGGAATCAACAGCAGCTTGGTGAAGTTGGACTGTATGAATAATAAGTTCACTGGTAATATCCCACCCAATCTTTGCTTTGGAAAGCAATTGATTGAGCTCAATATGGGAATTAATCAACTTCAAGGTGGCATACCTTCTGATGTAGGGAGATGTGTTACTCTAAGGAGGTTGATTCTCAAAGAAAATAATTTCACTGATTCTCTGCCTGATTTTGAAAGTAATATGAACCTCATATACATGGACATAAGCAAGAACAATATCAGTGGACCAATTCCATCAAGCTTGGGAAATTGCAGAAACCTCACTTACATTAATTTGTCCATGAACAAATTTACTGGGCCAATACCATCTCAGTTTGGAAAGCTTGTGAATCTTGTGATTTTGGATCTTGCTCACAACAACTTGGAAGGGGGTATCCCGGACTTTTTGGCAAAATTTAACAACCTTCGTGAGTTACAACTTGGTGGAAATTTGTTTGGAGGCAAAATTCCTCAATCAATAGGAACATTGCAGAATCTGTTTTATGGATTGAATCTGAGTGCTAATGGATTGACAGGTGACATTCCTGCAGAAATTAGCAATCTGAAACTACTGCAAAGTCTTGATATATCCTTGAACAATTTGACAGGAAAGCTAGATTTTCTTGGAAGTTTTATTTCATTAATTGAGGTCAATATTTCTTACAATTTCTTGGATGGTCCTGTACCTACAGGGCTAATGAAGTTATTGAATTCCTCACCATCATCATTCATGGGTAATCCTCTCCTATGTGTTAGTTGCTTGAGTTGCATCAGAACTATTTATGTGAAGCCATGTGTCTACAAATCAAGTAATCACAAAGGTATCAGTAAATTTGGAATTGTGATGATAGAACTCGGATCCTCAATATTTATTTCTGTCATGCTAATAATAGTGATTCTAACGTATCTACGTAGAAAGGAATCAAACATGGCCTCCACTGAGCGGTGGAATTTTATTGGAAGAGGAGCAGGGAGAAGGATTGGATTCATGTATGAGCGTGAAGTCACCTTAGTTGAAAAGAAGCCCTCTGCCCTTCAAGACCTAGTGTTGCAGGCTACAGAGAACCTAGATGATCAGTATATTGTTGGCAAAGGAGCACACGGTACTGTGTATAAAGCCAAACTAGGTGGACTGGTTTTCGCTGTAAAGAAGGTTGCATTTGCAAGGAACAAGCAAAGGCTCCTAAGTATCATGTATAAAGAAATTGAAATCCTTGGGACGTTTAAGCATCGGAATTTGATCACTTATGCAGACTACTGGTTTGGAGAGGACTATGGTTTAATCTTGTATGAGTTTATGGAAAATGGAAGCCTTCATGATGTTTTGCATGAAATGGAACCCCCACCAGCCTTAACATGGGATTGCCGGTTTAAGATAGCTGTTGGAATTGCTGAAGGACTAGCATATCTGCATTATGATATTAGACCACCCATTGTGCACAGAGACATCAAACCAAAGAATATACTTCTTGATGCTTCTATGGAGCCTCTTATAGCTGATTTTGGCACTGCCCTGTACAGGAACCTGTCTGAGGATTCTAATACTAATTTTGGAACCAGGAGAAGGCTTTCATCCAACGTTGCTGGTACCCCTGGCTATATTGCACCAGAGAATGCTTATGCAATAGTTCAGAGCAGAAAGTCTGACGTATATAGCTATGGGGTTGTTTTGCTTGAGCTAATAACCAGAAAGAAAGTATTAATTCAATCTTTGAATAATGAGGCAGAGGTGACCACTTTAGTACGTTGGGCTAGATCTGTATGGCTGGAAACAGGCAAAATTGAGATGATTGTTGATCCATATCTAGCAAGTGAATTTCCCTATATACTATCACTAGTCAAGCAGGTCACTGAAGTGTTTTTGTTGGCATTACAATGCACAGAGAGGGATCCACGTCAGAGACCCACCATGAAAGATGTTATTGACTTTTATAAACGGAAAGTATTCCAGTTGAGGTATGAGTATTTAGTGAGCACATAG 2844 0.3966 MTRNRSITTTLFLLVISFWSGASATVSDGVTLLSLLTHWTFVPPLINSSWNASDSIPCSWVGVQCDHARNVISLNLTHQGIFGQLGPQIGNLYHLQTLVLLGNGFSGKIPSELSNCSLLVYLDLSGNNFSGQIPYSFKKLQKLQYLSLSSNLLTGEIPDSLFQIPSLEELSLHSNLLSGPVPTNIGNLTKLLRLYLYGNHLSGTIPSSIGNCSKLEDLELSFNRLTGEIPVSVWRIPSLKHISVHNNSLFGELPLEMTNLKHLKNISLFDNQFSGVIPQSLGINSSLVKLDCMNNKFTGNIPPNLCFGKQLIELNMGINQLQGGIPSDVGRCVTLRRLILKENNFTDSLPDFESNMNLIYMDISKNNISGPIPSSLGNCRNLTYINLSMNKFTGPIPSQFGKLVNLVILDLAHNNLEGGIPDFLAKFNNLRELQLGGNLFGGKIPQSIGTLQNLFYGLNLSANGLTGDIPAEISNLKLLQSLDISLNNLTGKLDFLGSFISLIEVNISYNFLDGPVPTGLMKLLNSSPSSFMGNPLLCVSCLSCIRTIYVKPCVYKSSNHKGISKFGIVMIELGSSIFISVMLIIVILTYLRRKESNMASTERWNFIGRGAGRRIGFMYEREVTLVEKKPSALQDLVLQATENLDDQYIVGKGAHGTVYKAKLGGLVFAVKKVAFARNKQRLLSIMYKEIEILGTFKHRNLITYADYWFGEDYGLILYEFMENGSLHDVLHEMEPPPALTWDCRFKIAVGIAEGLAYLHYDIRPPIVHRDIKPKNILLDASMEPLIADFGTALYRNLSEDSNTNFGTRRRLSSNVAGTPGYIAPENAYAIVQSRKSDVYSYGVVLLELITRKKVLIQSLNNEAEVTTLVRWARSVWLETGKIEMIVDPYLASEFPYILSLVKQVTEVFLLALQCTERDPRQRPTMKDVIDFYKRKVFQLRYEYLVST. 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00656 947 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Seca8g00656 947 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 185 281 - -
Seca8g00656 947 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 927 - -
Seca8g00656 947 SMART serkin_6 644 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00656 947 Gene3D Ribonuclease Inhibitor 181 235 IPR032675 -
Seca8g00656 947 Gene3D Ribonuclease Inhibitor 236 547 IPR032675 -
Seca8g00656 947 ProSitePatterns Protein kinases ATP-binding region signature. 650 672 IPR017441 GO:0005524
Seca8g00656 947 SUPERFAMILY L domain-like 53 346 - -
Seca8g00656 947 Pfam Protein kinase domain 649 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00656 947 SUPERFAMILY L domain-like 252 546 - -
Seca8g00656 947 Pfam Leucine rich repeat 135 177 IPR001611 GO:0005515
Seca8g00656 947 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Seca8g00656 947 Pfam Leucine rich repeat 190 249 IPR001611 GO:0005515
Seca8g00656 947 SMART LRR_typ_2 427 451 IPR003591 -
Seca8g00656 947 SMART LRR_typ_2 140 164 IPR003591 -
Seca8g00656 947 SMART LRR_typ_2 188 212 IPR003591 -
Seca8g00656 947 SMART LRR_typ_2 403 426 IPR003591 -
Seca8g00656 947 Gene3D Phosphorylase Kinase; domain 1 626 720 - -
Seca8g00656 947 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 721 936 - -
Seca8g00656 947 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 24 184 - -
Seca8g00656 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 766 778 IPR008271 GO:0004672|GO:0006468
Seca8g00656 947 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Seca8g00656 947 ProSiteProfiles Protein kinase domain profile. 644 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00656 947 SUPERFAMILY Protein kinase-like (PK-like) 634 930 IPR011009 -
Seca8g00656 947 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 319 547 - -
Seca8g00656 947 Gene3D Transferase(Phosphotransferase) domain 1 721 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00656 Seca-Chr8 8078604 8081761 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00656 68 933 Receptor kinase-like Gene Family AT1G73080 41.474 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00656 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00656 - - aip:107608088 996.882