Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00649 ATGGATGTTCAAGTGATAAACATGGGAGAAGGCAGTGACCATCGAGCTATGGCAAATGGTGGGGATGCTGAACCTAGTGAAGGTGAAGTTAATAATGCTGGAAACTCTGGATCTCATGTTGAGGTTGGGGTTTCTGAGCCATATTTGGGAATGAAATTTGATTCTGAAGATGCTGCAAAAACTTTCTGCAATGACTATGCCAGACGTGCAGGTTTCAGCTCCAAAGCTGGCTCACTTGGTCAGCTTAAATCTGATGGGACCAATATGTACTGGGAATTTGTGTGCAGGGGGGAAGATTTAAAAAGAAAGCTTACTGAAAGTTGTAACGCAATGATTAGGATAGAGAAAAAGGGTCAAAGTAAGTGGTTTGTTACAAAATTTGTGAAGGAGCATAACCATTCCATGGTGAGCCATAGTAAGGTGAATAAACTTCAACCACGCAAGCACTTTTCTAGTGTTGGAAGAACTATGCCTGATACTTACCAAGGAGTGGGGCTCGTTCCAAGTGGTGTCATGTATATATCTTTAGATGGGAATCACATGCCGACTGAGAATATTCATGGGAATAGGAATAATCCTGCAGCTGCTACTGCTGAAACTAGTCACCCAGTTAATATTCATGGGATTAGGAATAATCCTGCAGCTGCTACTGCTGAAACTAGATACCCAGTTAAAAATCCCATATCAATGAATTATACTGTCAGTGTCAAGCCACCTATTCAAAAGAGGACGTTAGGGAGGGATGCTCGGAACCTGCTGGATTATTTTAAGAAAATACAGGCTGAGAACCCTGGTTTCTTCTACGCAATACAACTTGATGAAGATAATCACATGTCTAATGTATTTTGGGCAGATGCCAGATCAAGAACAGCATACAGTCATTTCGGTGATGCAGTTACTCTTGACACAACATACAAAGTAAATCAATATAGAGTGCCGTTTGCTCCATTCACTGGGGTAAACCATCATGGTCAGATGATTTTGTTTGGTTGTGCAATCCTTTTGGATGATTCTGAGGCTTCTTTTGTGTGGCTCTTTAAGACATTTCTGACAGCGATGAATGACCATCACCCTGTCTCTATAACTACTGATCAAAACAGAGCCATACAGACCGCAGTTGCACAAGTTTTTCCTCGAGCACGTCACTGTCTAAGCAAGTGGAATGTATTGCGAGAAGGCCAGGAAAAGTTGGCCCATGTATGTCACATGCATCCAAATTTTCAGATTGAACTTTATAATTGTATTAACCTGACAGAGACAATTGAGGAGTTTGATTCATCTTGGAATTCTATCATCAGTAAATATGAACTCGGAAAAAATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGCTAAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCTGTAATATCTCCTAATCATGGATTTGATGGTTTTTTTTATGATTTTGTCAACCAGCAGACAACATTACCCATGTTCTTTAGGCAGTATGAACAAGCTTTGGAGAGCTGGTCTCAAAAGGAAATAGAAGCAGATTTTGAGACAATTTGCACCTCACCAGTTCTAAAGACACCTTCACCAATGGAGAAGCAGGCTGCTGATCTTTATACACGGAAAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACTGCCAACAGATTTGAAGAAGATGGAGAAAATAGTATATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGTCATATATTGTCACATTAAACCATTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTTTTGACTGTTTTCACTGTGACTAATGTACTTACATTACCATCCCATTACATCTTAAAACGGTGGACAAGGAATGCAAAAAGCGGCATCGGATCAGATGAATGTGCTGGTGAATCACATGGAAATGAATCTCTGACATCACGGTATGCCAATCTTTGTCAGGAAGCCATCAGATGTGCTGAGGAAGGGGCAATAGCTGTGGAAACTTATGAGGTTGCAGTAAGTGCTCTTAGAGAAGCTAGAAAAAAGATTGCTGTCATGAAGAGAAGTGTTGCCAAAGCTGTACCACCTAGTAATCCAGTCAGTGGGACTGCTCATGACAACAGGAAATCCCCTACTCCAACATCAGATACAACCCCTCTTTTATGGCCGCGACAAGATGAAACAAAGAGGTTTAATCTTAATGATGTTGGTGCTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGAATGGCCCCAGTGTCTCTTCACCAAGATGATGGTCCACATGAAAATATGGTGGTCCTTCCACGTCTGAAATCAATGACATGGGGAATGGAGAACACAAACTCAACTCCAGGGAATAGAGTAGCTAATATCAATCTTAAGTTGCAACATTCTAGCAGGATTCCATCAACAGAATTTGAGGTTAAGTTTCAGGTCTCAAGAGTTACGTTGGAACCAATATTGAAGTCCATGACCCAGATCAGTGAACAGCTTTCAACAGCTCATAAGGTTGCTGTAATAAGTCTCAAGCTTCAAGAAATCCAGACAAATTCTGGTGAATCTGAAATTAAGTTCCAGGTGTCCCGGGACACATTAGGTGCTGTGCTACGATCGATGGCCTATATTCGTGAGCAACTTTCTTGTACTGGCGATGTGCACTCAGATCCTGTATTGAAAAGGCATCGAAAGTGA 2709 0.4086 MDVQVINMGEGSDHRAMANGGDAEPSEGEVNNAGNSGSHVEVGVSEPYLGMKFDSEDAAKTFCNDYARRAGFSSKAGSLGQLKSDGTNMYWEFVCRGEDLKRKLTESCNAMIRIEKKGQSKWFVTKFVKEHNHSMVSHSKVNKLQPRKHFSSVGRTMPDTYQGVGLVPSGVMYISLDGNHMPTENIHGNRNNPAAATAETSHPVNIHGIRNNPAAATAETRYPVKNPISMNYTVSVKPPIQKRTLGRDARNLLDYFKKIQAENPGFFYAIQLDEDNHMSNVFWADARSRTAYSHFGDAVTLDTTYKVNQYRVPFAPFTGVNHHGQMILFGCAILLDDSEASFVWLFKTFLTAMNDHHPVSITTDQNRAIQTAVAQVFPRARHCLSKWNVLREGQEKLAHVCHMHPNFQIELYNCINLTETIEEFDSSWNSIISKYELGKNDWLQSLYSARAKWVPAYFRDSFFAVISPNHGFDGFFYDFVNQQTTLPMFFRQYEQALESWSQKEIEADFETICTSPVLKTPSPMEKQAADLYTRKIFLKFQEELVETFAYTANRFEEDGENSIFRVAKFEDDQKSYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGIGSDECAGESHGNESLTSRYANLCQEAIRCAEEGAIAVETYEVAVSALREARKKIAVMKRSVAKAVPPSNPVSGTAHDNRKSPTPTSDTTPLLWPRQDETKRFNLNDVGAPVQSVADLNLPRMAPVSLHQDDGPHENMVVLPRLKSMTWGMENTNSTPGNRVANINLKLQHSSRIPSTEFEVKFQVSRVTLEPILKSMTQISEQLSTAHKVAVISLKLQEIQTNSGESEIKFQVSRDTLGAVLRSMAYIREQLSCTGDVHSDPVLKRHRK. 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00649 902 Pfam FAR1 DNA-binding domain 62 136 IPR004330 -
Seca8g00649 902 MobiDBLite consensus disorder prediction 696 725 - -
Seca8g00649 902 Pfam SWIM zinc finger 576 610 IPR007527 GO:0008270
Seca8g00649 902 MobiDBLite consensus disorder prediction 1 39 - -
Seca8g00649 902 Pfam MULE transposase domain 299 390 IPR018289 -
Seca8g00649 902 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 688 IPR031052 GO:0006355
Seca8g00649 902 ProSiteProfiles Zinc finger SWIM-type profile. 576 612 IPR007527 GO:0008270
Seca8g00649 902 SMART 26again6 587 614 IPR006564 GO:0008270
Seca8g00649 902 MobiDBLite consensus disorder prediction 704 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00649 Seca-Chr8 7981511 7988050 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca8g00649 MULE 2.1e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00649 - - gmx:100807296 1327.77