Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00641 ATGGAAGAAAAACTAGAAAGAACAACTGAAGGACAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAGCCATTGACTATTGAGGAGATCATTGTGGCACCACCAATGCCTCATGAAGCTCGGATTCGGATTATATGCACCTCTCTTTGTCACAGTGATATCACTTTCTGGAAGATGAAGGAACCCCCTGCAATCTGTCCAAGAATTCTGGGGCATGAGGCAATTGGGGTTGTTGAAAGTGTAGGAGAGGATGTAACTGAAGTTACAAAAGGGGATGTGGTTATCCCAATTTTCATTGCTGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAACCTTTGCTCAAAGTTTCCTTTCAAGGTGTCTCATGGGATGCCTAGATATGATACCACTAGATTCAAGGATCTAAAAGGAGAGATCATACACCATTTCTTGTTTGTTTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCAGCAATTCCTCCCAACAAGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTACAGTTGCTATTTTTGGACTAGGATGCATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATGTCAACCCAGAAAAATCTGAAATTGGAAAGAAGTTTGGACTCACAGACTTTGTTCATGCTGGAGAATGTGTAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCTTATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGGGCGAACTTGAACCTTAGCTGTAGTGATGTCCTTGTTCAAGGGAAGAGTCTCATGGGATCCTTATTTGGAGGACTTAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGATAAGGAGCTGAAGTTGGATGAGTTTGTCACACATGAGGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGATTAAAGGACAATGTCTTCGATGTGTGATTTGGATGGACAAATGA 1164 0.4278 MEEKLERTTEGQPIRCKAAVCRKPGEPLTIEEIIVAPPMPHEARIRIICTSLCHSDITFWKMKEPPAICPRILGHEAIGVVESVGEDVTEVTKGDVVIPIFIADCGECIDCKSTKSNLCSKFPFKVSHGMPRYDTTRFKDLKGEIIHHFLFVSSFSEYTVVDIANLTKIDPAIPPNKACLLSCGVSTGVGAAWRTAGVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDVNPEKSEIGKKFGLTDFVHAGECVNKSVSQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPGANLNLSCSDVLVQGKSLMGSLFGGLKPKSHVPILLKRYMDKELKLDEFVTHEVEFKDINKAFDLLIKGQCLRCVIWMDK. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00641 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Seca8g00641 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Seca8g00641 387 Pfam Alcohol dehydrogenase GroES-like domain 40 168 IPR013154 -
Seca8g00641 387 Gene3D - 19 380 - -
Seca8g00641 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Seca8g00641 387 FunFam Alcohol dehydrogenase 6 19 199 - -
Seca8g00641 387 SUPERFAMILY GroES-like 9 194 IPR011032 -
Seca8g00641 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Seca8g00641 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Seca8g00641 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Seca8g00641 387 Gene3D - 188 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00641 Seca-Chr8 7886200 7889680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00641 42 334 Monolignol Biosynthesis Gene Families AT4G37990 24.746 6.21e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00641 K00121 - gmx:100806887 702.205