Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00629 ATGCAGGCTATCTGGTTGATGCTGTTTTTGTTGGTGGCTATTGTGTTGGGAAATTCAGATATTGATGCACTCCTTGAACTCAAGAAGAGTATTCAAAATGACCCTTCTGGATTAGTTTTTAGTTCTTGGGATTCCAAGTCTTTAGATTCAGATGGGTGTCCTCAGAACTGGTATGGGATATTGTGCACTGAAGGCAGTGTTATATCAATCACTCTGGATAATGCTGGTATGGTTGGAGAGTTCAATTTTCTTGCCATTAGTGGCCTTACAATGCTCCGGAACTTGTCAGTTGTGAACAACCAGTTCACAGGAAGTATCATACATATTGGTCCAATGAAATCACTTGAATTTCTTGATTTGTCCTGCAACAAATTTAATGGGTCATTACTCTCTAACTTTGTTGAATTGCATAGTTTAGTATATCTGAATCTTTCTTCAAATGAATTTACTGGTACTCTTCCTATTGAGTTTCACAAACTTGAGCAGTTGAAATATTTAGATTTGCACACTAATAACTTTTCTGGGGATATTGTGCATATCTTATCCAAGATGGGGAGTGTGCTACATGTTGACTTAAGCAGCAACATGTTTTCTGGTACACTGGATTTGGGACTTGGAGATGACTCCTTTCTTTCCTCAATTCAATATTTAAATGTTAGCTACAATTCCTTGATTGGTGAGCTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTCCTTGATGCTAGTAATAATCAGCTAGTGGGTCATATACCTTCCTTCACCTTTGTGGTATCTCTAAGGATTCTTCGACTTGCATGCAACCAGTTGACAGGTTCACTGCCTGAAACTTTATTGAGGGAAAGTTCAATGATGTTGTCTGAACTGGATCTTAGTCAAAACCAGCTTGAAGGTCCCATTGGAAGTATTACCTCAGTAACTCTCAGGAAGCTTAATATATCTTCAAACAAATTGTCAGGCCCCTTACCTCTCAGGGTAGGTCACTGTGCCATCCTAGATTTGAGTAACAACATGCTGTCAGGTAATGTGTCAAGGATTCAGTATTGGGGTAACTATGTTGAAGTTATTCAGCTAAGTACAAACTCATTGACAGGAATGCTGCCAAATGAAACTACTCAATTTTTAAGGTTATCTGCACTTAGGATATCCAATAACTCATTGGAGGGATTTCTCCCCCCAGTCTTGGGAACATATCCAGAACTAAAAGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTCCTACCAAGCTTTTTTACCTCAACCAAGTTGACTAATCTTAACCTCTCAAACAATAAGTTTTCCGGACCAATTCCTGTTCAACTTCAACCTCTAAATAATCCATTAGTTTCTTCTGAAAATTTTAGTCTGGTGTTTCTTGATCTTTCAAACAACAACTTAAGTGGGCCTCTTCCTTCAAAAATGAATAAGCTTCACAATTTAGCATATCTCAATCTATGTAACAACAAATTTGAAGGTACTATTCCTAATGATCTTCCAAATGAGTTGAGAGGATTCAATGTGTCCTTCAATAATCTTTCTGGTGTTGTCCCAAACAACTTGATCCAGTTTCCTGAATCAGCATTTCATCCGGGAAATACTATGCTGATATTTCCACATTCACAATTATCACCAAAAGATAATTCCAACCTGGGTTTGAGGGAACATGGGTTACACAAAAGATCTGCAACGAGGAGTGTCTTGATTGCATGTCTGGTTACTGGTGCTATTGTGATGGCTATTGTGGGTATAATGACTTATTATAGGGTTCATCAAAAAACAGAAGGGACTTCTAAACAAAATGCACCAAGTGGAATCATCCAAGAGAGTACTTCCACAACAAAGACAGAAGCACCTAGCAGAAATTTGGAATCATTACCACCTTCTCAAAAGCAGTCAGCTGATGATACCAGAAACATTCATCCAATAGTAAAAAAACCAAAAGATTTTGATCATCCTGAATTAGTTAAGAATGAGGAAGGAACTTCTTCTCCAATGTCTACTTTGTCAGCTTCAAATCCTTCATCTTCTAAAAGCCATCAGTTTGAGAATCCTGGCTCCCTCAAAGTATCCTCTCCAGATAAACTGGTTGGGGACTTGCATCTCTTTGATGGATCCTTGGTGCTAACTGCAGAAGAACTTTCATGTGCTCCAGCAGAAGTTGTTGGCAGGAGTTGTCATGGAACACTCTACAAAGCCACACTTGATTCTGGTCATACATTGGCTGTCAAATGGTTAAGAGAAGGAATAACTAAAGGGAAAAAGGAGTTGGCAAGGGAAATAAAGAAACTTGCAACTATCAAGCATCCAAGCCTGGTTTCTGTTCAGGGTTACTACCTGGGGCCAAAGGAGCATGAGAGACTGATTATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCATGAGGCAGATAAAAGAAATCTCCATCCTTTGTCTCTTGATGAGAGGCTCAGGGTGGCAGTAGAGGTGGCGCGATGTCTGCTTTACCTACACGATGAGAAAGCCATACCTCATGGCAATCTCAAATCCACAAACATTCTACTAGAAACTCCTAACAGAAATGTCCTCATCACTGATTACAGCCTGCACAGAATACTTACTGCTTCTGGTACTGCTGAGCAAGTTCTGAATGCTGGCGCACTTGGCTATCGACCACCCGAGTTTGCTAGATCAAGCAAACCATGCCCTTCCTTGAAGAGTGATGTCTATGCATTTGGTGTTGTCTTGTTAGAGCTCCTAACAGGAAGAAATTCTGGAGAAATAGTTTGTGGTATTCCAAGAGTGGTTGACCTTACTGACTGGGTGAGGTTCTTAGCTGAACATGATCGTTCAAGTCAGTGCTTTGATAGGTCCCTTTTGGACAAGAACAATGGATCAGAAAGATCATCTAGGATTCTTGATGACATGCTAAAAGTGGCTCTTAGATGCATCCTTCCAGCATCTGAGAGGCCTGACATGAAAACAGTCTTTGATGATCTTTCAACAATAAGGTAG 3015 0.398 MQAIWLMLFLLVAIVLGNSDIDALLELKKSIQNDPSGLVFSSWDSKSLDSDGCPQNWYGILCTEGSVISITLDNAGMVGEFNFLAISGLTMLRNLSVVNNQFTGSIIHIGPMKSLEFLDLSCNKFNGSLLSNFVELHSLVYLNLSSNEFTGTLPIEFHKLEQLKYLDLHTNNFSGDIVHILSKMGSVLHVDLSSNMFSGTLDLGLGDDSFLSSIQYLNVSYNSLIGELFAHDGMPYLDNLEVLDASNNQLVGHIPSFTFVVSLRILRLACNQLTGSLPETLLRESSMMLSELDLSQNQLEGPIGSITSVTLRKLNISSNKLSGPLPLRVGHCAILDLSNNMLSGNVSRIQYWGNYVEVIQLSTNSLTGMLPNETTQFLRLSALRISNNSLEGFLPPVLGTYPELKEIDLSLNQLSGFLLPSFFTSTKLTNLNLSNNKFSGPIPVQLQPLNNPLVSSENFSLVFLDLSNNNLSGPLPSKMNKLHNLAYLNLCNNKFEGTIPNDLPNELRGFNVSFNNLSGVVPNNLIQFPESAFHPGNTMLIFPHSQLSPKDNSNLGLREHGLHKRSATRSVLIACLVTGAIVMAIVGIMTYYRVHQKTEGTSKQNAPSGIIQESTSTTKTEAPSRNLESLPPSQKQSADDTRNIHPIVKKPKDFDHPELVKNEEGTSSPMSTLSASNPSSSKSHQFENPGSLKVSSPDKLVGDLHLFDGSLVLTAEELSCAPAEVVGRSCHGTLYKATLDSGHTLAVKWLREGITKGKKELAREIKKLATIKHPSLVSVQGYYLGPKEHERLIISNYMNAQSLDIYLHEADKRNLHPLSLDERLRVAVEVARCLLYLHDEKAIPHGNLKSTNILLETPNRNVLITDYSLHRILTASGTAEQVLNAGALGYRPPEFARSSKPCPSLKSDVYAFGVVLLELLTGRNSGEIVCGIPRVVDLTDWVRFLAEHDRSSQCFDRSLLDKNNGSERSSRILDDMLKVALRCILPASERPDMKTVFDDLSTIR. 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00629 1004 MobiDBLite consensus disorder prediction 598 694 - -
Seca8g00629 1004 MobiDBLite consensus disorder prediction 664 692 - -
Seca8g00629 1004 MobiDBLite consensus disorder prediction 642 662 - -
Seca8g00629 1004 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 230 459 - -
Seca8g00629 1004 Gene3D Ribonuclease Inhibitor 211 556 IPR032675 -
Seca8g00629 1004 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Seca8g00629 1004 MobiDBLite consensus disorder prediction 598 641 - -
Seca8g00629 1004 SUPERFAMILY L domain-like 335 527 - -
Seca8g00629 1004 FunFam Nuclear pore complex protein NUP107 17 179 - -
Seca8g00629 1004 SUPERFAMILY L domain-like 37 344 - -
Seca8g00629 1004 FunFam Leucine-rich repeat receptor-like protein kinase 705 797 - -
Seca8g00629 1004 Pfam Protein tyrosine and serine/threonine kinase 724 925 IPR001245 GO:0004672|GO:0006468
Seca8g00629 1004 PANTHER OS07G0626500 PROTEIN 5 101 - -
Seca8g00629 1004 Gene3D Ribonuclease Inhibitor 19 133 IPR032675 -
Seca8g00629 1004 Gene3D Phosphorylase Kinase; domain 1 726 798 - -
Seca8g00629 1004 Gene3D Transferase(Phosphotransferase) domain 1 799 1004 - -
Seca8g00629 1004 Gene3D Ribonuclease Inhibitor 134 210 IPR032675 -
Seca8g00629 1004 SUPERFAMILY Protein kinase-like (PK-like) 724 1000 IPR011009 -
Seca8g00629 1004 ProSiteProfiles Protein kinase domain profile. 720 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00629 1004 Pfam Leucine rich repeat N-terminal domain 18 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00629 Seca-Chr8 7706547 7712283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00629 335 501 Receptor kinase-like Gene Family AT1G48480 29.545 6.18e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g00629 PK_Tyr_Ser-Thr 6.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00629 - - ccaj:109792420 1648.25