Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00622 ATGGATTCGTTTGGGCCAAATGGGAACGAGGATTCTTTGCCACCACCACCTCCTGTTATCCCACCAGATGTTGAGCCAGCGAAAGCTGAAGAGGGGCTACCCCCTGAGCCAATTAAGAAAAAGCCTTCCCGTCTTCCAATAGCTAGGCGTGGTCTGGGGTCAAAGGGAACGAAGCTGCCCCTTCTCACTAACCACTTCAAAGTTAATGTTGCTAACAACGATGGGCATTTCTACCAGTATAGCGTATCTGTTTCTTATGAAGATGGACGCCCTGTTGAAGGTAAGGGTGTAGGGAGAAAGGTAATCGACAGGGTTCAAGAAACCTATGATTCCGAGCTTAATGGAAAGGACTTTGCCTATGACGGTGAAAAAACTTTGTTTACTATGGGCTCTCTTGCTCGCAACAAGCTTGAGTTTACTGTTGTTCTGGAGGATGTCACATCAAACAGGAATAATGGAAACTGCAGCCCTGACGGTAATGGAAGTCCAAATGACAATGACAGGAAGAGGATGAGACGCCCCTACCGCTCCAAGACATTTAAAGTTGAGATTAGCTTTGCTGCAAAAATTCCATTGCAGGCCATTGCCAATGCCTTACGTGGGCAGGAATCAGAGAATTACCAAGAAGCCATAAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAACAAGGCTGTCTGCTTGTGCGCCAATCATTCTTCCACAATGATCCAAAGAATTTTGCTGATGTAGGAGGTGGTGTTCTCGGTTGCAGAGGCTTCCATTCCAGCTTTAGAACCACACAGAGTGGCCTGTCCCTAAACATAGATGTCTCTACCACCATGATAATTCAGCCTGGGCCTGTGGTTGACTTCTTAATTGCCAATCAAAATGTGAGAGATCCTTATTCCCTTGACTGGGCAAAGGCCAAGAGGACACTAAAAAATCTGAGGATCAAAACCAGCCCATCTAACCAAGAGTACAAAATTACAGGGCTCAGTGAACTCCCATGCAAAGAGCAAACGTTTACTCTGAAGAATAAAGGTGGAAGCAATGGGGATGCAACTGAACAGGAAATTACGGTTTATGATTATTTTGTTAATATTCGTAAGATAGATCTCCGGTACTCTGGTGATCTTCCATGTATCAATGTTGGCAAGCCAAAAAGGCCAACTTATGTTCCCCTTGAGCTTTGCTCTTTGGTTTCTTTGCAACGATATACAAAAGCACTGTCCACACTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCTCAAGAAAGGATGAGGGTTTTATCTGATGCTTTTAAAACCAGCAATTATGGCTCTGAACCCATGCTTCGCAATTGTGGAATTCAAATTAACTCTGGCTTTACTCAAGTTGAGGGTCGTGTTTTGCAAGCTCCAAGGTTGAAATTTGGCAATGGTGAGGATTTCAATCCTAGGAATGGGAGATGGAACTTTAATAACAAGAAAATAGTACAGCCAGTGAAAATAGAAAGGTGGGCTGTTGCTAATTTCTCGGCACGCTGTGATGTAAGAGGGCTTGTCAGGGATCTTATTAGATGTGGAGAAATGAAAGGAGTTATGATAGACCAACCTTTTGATGTGTTTGAGGAAAATGGGCAGTTTAGGCGTGCCCCACCACTTGTTAGAGTTGAGAAAATGTTTGATTCTATTCAGTCCAAGCTTCCTGGGGCCCCTCAGTTTCTTCTCTGTCTGCTTCCAGAGCGGAAGAACTCTGATCTCTATGGTCCATGGAAGAAGAAAAATCTTGCTGAATTTGGAATTGTTACTCAGTGCATATCTCCTATGAGGGTGAATGACCAATATCTTACTAATGTTTTGTTAAAGATCAATGCTAAGCTTGGTGGGTTGAATTCACTGTTAGGTGTTGAACATTCTCCTTCCATTCCTCTTGTTTCTAAAGTTCCCACCATCATTCTCGGCATGGATGTGTCTCATGGCTCACCAGGACAATCTGATATTCCTTCTATTGCTGCGGTTGTCAGTTCTAGACAATGGCCTCTGATATCAAAATACAGGGCATGTGTTCGCACTCAATCTCCTAAGGTTGAAATGATTGATAATTTGTTCAAGCAAGTGTCTGAAAAGGAGGATGAAGGAATCATAAGGGAGCTTCTGATTGATTTCTATTCAAGTTCGGGCAAGAGAAAACCAGATAATATAATCATATTCAGGGATGGAGTTAGCGAGTCCCAGTTCAATCAAGTTTTGAACATTGAACTTAATCAAATCATTGAGGCCTGTAAGTTTCTTGATGAAACATGGAACCCTAAATTTCTGGTGATTGTTGCTCAAAAGAACCATCATACAAAATTCTTTCAACCTGGATCTCCTGACAATGTTCCTCCTGGAACCGTGATTGATAATAAAATTTGTCATCCTCGAAATTATGATTTCTACTTGTGTGCACATGCTGGGATGATAGGTACAAGCAGGCCTACCCATTATCATGTTCTATTGGATGAGATTGGTTTTTCTCCTGATGAATTACAAGAGCTTGTCCATTCTTTATCATATGTGTACCAGAGGAGCACCACTGCCATTTCTGTTGTTGCTCCGATATGCTATGCTCACTTAGCTGCAACTCAGATGGGGCAGTTTATGAAATTTGAGGACAAATCTGAGACATCTTCAAGTCATGGTGGACTGACTTCTGCTGGTGCTGCTCCAGTCCCTCAGTTACCCAAATTGCAGGAGAACGTTTGCAACTCAATGTTCTTTTGTTGA 2742 0.4274 MDSFGPNGNEDSLPPPPPVIPPDVEPAKAEEGLPPEPIKKKPSRLPIARRGLGSKGTKLPLLTNHFKVNVANNDGHFYQYSVSVSYEDGRPVEGKGVGRKVIDRVQETYDSELNGKDFAYDGEKTLFTMGSLARNKLEFTVVLEDVTSNRNNGNCSPDGNGSPNDNDRKRMRRPYRSKTFKVEISFAAKIPLQAIANALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRIKTSPSNQEYKITGLSELPCKEQTFTLKNKGGSNGDATEQEITVYDYFVNIRKIDLRYSGDLPCINVGKPKRPTYVPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDAFKTSNYGSEPMLRNCGIQINSGFTQVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIERWAVANFSARCDVRGLVRDLIRCGEMKGVMIDQPFDVFEENGQFRRAPPLVRVEKMFDSIQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLAEFGIVTQCISPMRVNDQYLTNVLLKINAKLGGLNSLLGVEHSPSIPLVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSPKVEMIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQIIEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGLTSAGAAPVPQLPKLQENVCNSMFFC. 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00622 913 Pfam N-terminal domain of argonaute 58 218 IPR032474 -
Seca8g00622 913 SMART Piwi_a_2 566 874 IPR003165 GO:0003676
Seca8g00622 913 MobiDBLite consensus disorder prediction 1 52 - -
Seca8g00622 913 Pfam PAZ domain 284 413 IPR003100 GO:0005515
Seca8g00622 913 FunFam Protein argonaute 3 634 913 - -
Seca8g00622 913 ProSiteProfiles PAZ domain profile. 305 397 IPR003100 GO:0005515
Seca8g00622 913 SMART DUF1785_2 228 280 IPR014811 -
Seca8g00622 913 MobiDBLite consensus disorder prediction 10 24 - -
Seca8g00622 913 Pfam Argonaute linker 2 domain 423 469 IPR032472 -
Seca8g00622 913 Pfam Piwi domain 567 874 IPR003165 GO:0003676
Seca8g00622 913 Gene3D - 461 627 - -
Seca8g00622 913 CDD Piwi_ago-like 441 868 IPR045246 -
Seca8g00622 913 SUPERFAMILY Ribonuclease H-like 550 872 IPR012337 -
Seca8g00622 913 FunFam Protein argonaute 7 275 401 - -
Seca8g00622 913 ProSiteProfiles Piwi domain profile. 566 874 IPR003165 GO:0003676
Seca8g00622 913 Gene3D - 633 913 IPR036397 GO:0003676
Seca8g00622 913 Pfam Argonaute linker 1 domain 230 278 IPR014811 -
Seca8g00622 913 CDD PAZ_argonaute_like 280 396 - -
Seca8g00622 913 Gene3D paz domain 274 401 - -
Seca8g00622 913 MobiDBLite consensus disorder prediction 150 173 - -
Seca8g00622 913 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 876 - -
Seca8g00622 913 SUPERFAMILY PAZ domain 275 437 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00622 Seca-Chr8 7570372 7578241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00622 49 913 Eukaryotic Initiation Factors Gene Family AT5G43810 35.516 1.83e-166 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00622 K11593 - gmx:100779439 1628.99