Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00616 ATGGCCAAGAAGCGAAAGCTTCGATCCGACCCCGAGCCTGCCAAGCCTGTCGAAGAACCACCCCAACAAGACCAACAACAACAACAGCAACAACAAACAGACCAGGAAGTAGAAGAACACCACAACATGGCTGTCGACGAAGACAACGCCCCAACACAGGAAGAAGAACAAGAAGATCAGCCTCAAAACGACGCCGAAGAACAAGAACAAGAAGGAGGACAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAACAACAAGAACAAGAAACCCTAGAAGAAGAACACCAACAAGAGCAAGAGCGTGGAGATGCACAAGCTTCAAACCCTGCTGCCACGTCAGAAGCAAATGGCAACAACAATAACGAAGAGGAAGACCTTGATTTGGAGGACGAGCCCGTGGAGAAGCTTCTCGAACCTTTCACGAGGGAGCAATTGCACTCTCTCGTGAAGCAAGCCGTCGAGAAACACCCTGATTTCGTCGAGAACGTTCGCCAGCTGGCTGACGTCGACCCCGCTCACCGGAAAATCTTCGTCCATGGCCTCGGTTGGGATGCCACCGCCGAAACCCTAACCGCCGTGTTCGGGAAGTACGGCGAGATCGAAGACTGCAAGGCTGTCACCGACAAGTTGTCAGGGAAATCGAAGGGCTATGCCTTCATCTTGTTCAAGCACAGAGATGGGGCTCGGAAGGCGCTGAAGAATCCACAGAAGAAGATTGGGAACCGAACTACGTCGTGTCAGTTGGCCTCCGCCGGACCTGTTCCGGCGCCGCCGCCTAATGCCCCGCCGGTTTCTGAGTACACACAGAGGAAGATCTTTGTGAGCAATGTGAATGCAGAGATTGATCCCCAGAGGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTGGAGGATGGTCCTCTTGGGCTTGATAAGCAAACTGGGAAGCCTAAAGGGTTTGCTCTCTTTGTTTACAAGTCAGTGGATAGTGCCAAGAAGGCTTTGGAAGAGCCACACAAAATTTTTGAGGGGCACACTTTGTATTGTCAGAAGGCTGTTGATGGTCCAAAAGGAAGTAAAGGGTATCATCAGCAACATCAACAGCACCAACACCATTCTCACCATCATCATCAGCATCAGCCCCATTACCATTCAAGGAAGGAGAAGAACAAGTATGGTGGCGGTGGTGGGCCATCACATGGTGGTGGTGGTGGTCACTTGATGGCGCCCTCAGGCCCTGCTGTAGGGGGTTTCAATCCAGGAGTACAGGCTCAAGGGTTGAATCCTGCACTTGGACAGGCTTTAACTGCTTTGCTTGCAAATCAAGGAGCTGCTGGGTTGGGGCTTGGGAATCTGCTTGGAGGTCTTGGCGGTGCACCGGTGAACCAGGCTGGGCCACCTGCTGCGTATGGTAATCAAGCTGCTATGAGCTATGGGAACCAACCAGGGATGCAACCGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGACCTCACCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG 1518 0.5244 MAKKRKLRSDPEPAKPVEEPPQQDQQQQQQQQTDQEVEEHHNMAVDEDNAPTQEEEQEDQPQNDAEEQEQEGGQEEEEEEEEEEQQEQETLEEEHQQEQERGDAQASNPAATSEANGNNNNEEEDLDLEDEPVEKLLEPFTREQLHSLVKQAVEKHPDFVENVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKLSGKSKGYAFILFKHRDGARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVNAEIDPQRLLEFFKQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEEPHKIFEGHTLYCQKAVDGPKGSKGYHQQHQQHQHHSHHHHQHQPHYHSRKEKNKYGGGGGPSHGGGGGHLMAPSGPAVGGFNPGVQAQGLNPALGQALTALLANQGAAGLGLGNLLGGLGGAPVNQAGPPAAYGNQAAMSYGNQPGMQPGYQNPQMGQSSGVRPHPGAGAPYMGH. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00616 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 347 IPR000504 GO:0003723
Seca8g00616 505 MobiDBLite consensus disorder prediction 1 17 - -
Seca8g00616 505 MobiDBLite consensus disorder prediction 102 119 - -
Seca8g00616 505 MobiDBLite consensus disorder prediction 1 128 - -
Seca8g00616 505 SUPERFAMILY RNA-binding domain, RBD 171 347 IPR035979 GO:0003676
Seca8g00616 505 SMART rrm1_1 271 343 IPR000504 GO:0003723
Seca8g00616 505 SMART rrm1_1 175 247 IPR000504 GO:0003723
Seca8g00616 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Seca8g00616 505 MobiDBLite consensus disorder prediction 357 379 - -
Seca8g00616 505 MobiDBLite consensus disorder prediction 34 48 - -
Seca8g00616 505 Gene3D - 261 400 IPR012677 -
Seca8g00616 505 MobiDBLite consensus disorder prediction 49 91 - -
Seca8g00616 505 Gene3D - 70 255 IPR012677 -
Seca8g00616 505 MobiDBLite consensus disorder prediction 474 490 - -
Seca8g00616 505 Coils Coil 63 101 - -
Seca8g00616 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 272 340 IPR000504 GO:0003723
Seca8g00616 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 243 IPR000504 GO:0003723
Seca8g00616 505 MobiDBLite consensus disorder prediction 474 505 - -
Seca8g00616 505 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 51 350 - -
Seca8g00616 505 MobiDBLite consensus disorder prediction 346 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00616 Seca-Chr8 7505950 7507491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00616 266 349 C2H2 Transcription Factor Family AT2G19380 29.762 2.04e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00616 K12741 - gmx:100783742 600.897