Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00607 ATGAGTCAGCCTAAAATTAAGCGCCGAGTTGGTAAATATGAGGTTGGGAGGACCATTGGTGAGGGAACATTTGCAAAAGTGAAATTTGCAAGGAACTCTGAGACAGGGGACCCTGTGGCTCTCAAAATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAAGCGGGAAGTAGCTACAATGAAGTTGATCAAGCATCCAAATGTTGTTAGGTTATATGAGGTCATGGGAAGCAAGTCGAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGAGAGCTCTTTGACAAAATCGTAAACCATGGACGGATGGGTGAAGATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCATAGCAGGGGTGTTTACCACAGAGACCTGAAGCCAGAAAATTTGCTATTAGATGAATATGGGAACCTTAAAGTTTCTGATTTTGGGTTGAGTGCACTCTCCCAGCAAGTTAGGGATGATGGGCTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTAATGATAGAGGCTATGATGGGGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGCTACTTGCCTTTTGATGACCCTAATCTTATGGACCTGTATAAAAAAATCTCAGCAGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCTAGGAAATTGATAACTCGAATCTTGGATCCCAATCCCATGACTTCATTGTCATCTGCAGTAGTTATGTTTATTTTTCTCTACACTGTATGGCAGCGTATTACTATACCTGAGATTTTGGATGATGAATGGTTCAAGAAAGATTATAAGCCTCCAGTTTTTGAAGAGAATGGGGAAACCAACCTTGATGATGTAGAAGCTGTCTTTAAAGACTCTGAAGAGCACCATGTGACAGAGAAGAAAGAGGAGCAGCCAACAACCATGAATGCATTTGAGTTAATCTCCATGTCAAGAGGGCTGAACCTTGAAAACCTGTTTGATATAGAGCAGGGATTTAAAAGGGAAACAAGATTCACATCAAAATCCCCTGCTAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGGAACCTTAATGTTGCCACAGAGATATTTCAAGTGGCACCATCCCTTCACATGGTTGAGGTACGGAAAGCAAAAGGCGATACATTGGAGTTCCATAAGTTCTACAAAAAACTTTCAACATGTTTGGAGGATGTTGTTTGGAAAACAGAAGATGATATGCAAAAGCAAGAAGCAAAATGA 1377 0.4118 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGDPVALKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVRLYEVMGSKSKIYIVLEFVTGGELFDKIVNHGRMGEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDEYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMDLYKKISAAEFTCPPWLSFSARKLITRILDPNPMTSLSSAVVMFIFLYTVWQRITIPEILDDEWFKKDYKPPVFEENGETNLDDVEAVFKDSEEHHVTEKKEEQPTTMNAFELISMSRGLNLENLFDIEQGFKRETRFTSKSPANEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTCLEDVVWKTEDDMQKQEAK. 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00607 458 FunFam Non-specific serine/threonine protein kinase 6 326 - -
Seca8g00607 458 FunFam Non-specific serine/threonine protein kinase 322 447 - -
Seca8g00607 458 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 436 - -
Seca8g00607 458 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Seca8g00607 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Seca8g00607 458 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Seca8g00607 458 Gene3D Transferase(Phosphotransferase) domain 1 93 292 - -
Seca8g00607 458 Gene3D Kinase associated domain 1, KA1 322 447 - -
Seca8g00607 458 CDD CIPK_C 329 438 - -
Seca8g00607 458 Pfam Protein kinase domain 13 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00607 458 Pfam NAF domain 325 384 IPR004041 GO:0007165
Seca8g00607 458 CDD STKc_SnRK3 12 284 - -
Seca8g00607 458 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Seca8g00607 458 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00607 458 SUPERFAMILY Protein kinase-like (PK-like) 9 298 IPR011009 -
Seca8g00607 458 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Seca8g00607 458 SMART serkin_6 13 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00607 Seca-Chr8 7350760 7357812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00607 5 428 CBL-interacting serine-threonine protein kinases AT2G26980 78.302 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca8g00607 Pkinase 7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00607 - - gmx:100794566 841.262