Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00606 ATGGGAAACTCATGCACAAAACCAGTTGCTCATATGTCTTCCACAAGTTTTTTTGGAAGTACAAAATCTCAAAATAAGACAAAGCAGAATTCAAATTCTCCTGAAGGAAAAGCTTCAGCAACAAATGTTGACATATCCATCTCCAGTAATGTTAAGTCCTTCACCTTCAATGATCTAAAGGAGGCCACCAAGAACTTCCGGCAAGAAAATTTAATTGGGGAGGGAGGTTTTGGGTTTGTCTACAAGGGATGGATAGATGAGAACACTGGTGCTCCCACAAGACCAGGAACTGGGATTGTAGTGGCCATTAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACATCACCATGAAAATTTGGTGAAACTTATTGGTTACTGCTCAGAAGGTAACAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTTAGAATGGCAGAAGGTGTTGAACCAATTTCCTGGATTACGCGGATCAATATAGCAATTGCAGTTGCAAAAGGACTAGCATTCTTACATTCCCTTGATAAAAATGTTATCTATCGCGATTTAAAGGCTTCCAACATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTCATTGGAACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGGACATTTGACCTCGAGGAGTGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGACAGACCTGGATTTTCAGATGAAACATTGGTAGATTGGGCAAGACCCTTCCTGAATGACAGTAGAAGAATTTTGAGAATCATGGATACCAGGTTGGGTGGACAATACTCCAAGAGAGGAGCCCAAGCTGCAGCTGCACTTGTACTGCAATGTCTAAATAGTGACCCCAAATATAGACCACCGATGGTGAATGTTCTAGCTGCATTGGAAGCACTACATTCCTCAAATTCAATCCCAAGGACCCCAAAATCTGGTACTGAGAATCATGCTACCAAGCATTCTAATCATTCCCATAAGTCAGTTGGCAATACTAACAAACTATGA 1164 0.4107 MGNSCTKPVAHMSSTSFFGSTKSQNKTKQNSNSPEGKASATNVDISISSNVKSFTFNDLKEATKNFRQENLIGEGGFGFVYKGWIDENTGAPTRPGTGIVVAIKKLKPESFQGHKEWLAEVNYLGQHHHENLVKLIGYCSEGNNRLLVYEFMQKGSLENHLFRMAEGVEPISWITRINIAIAVAKGLAFLHSLDKNVIYRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTSRSDVYSFGVVLLELLTGRRVVEDDRPGFSDETLVDWARPFLNDSRRILRIMDTRLGGQYSKRGAQAAAALVLQCLNSDPKYRPPMVNVLAALEALHSSNSIPRTPKSGTENHATKHSNHSHKSVGNTNKL. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00606 387 MobiDBLite consensus disorder prediction 16 41 - -
Seca8g00606 387 ProSiteProfiles Protein kinase domain profile. 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00606 387 PANTHER OS01G0588500 PROTEIN-RELATED 27 353 - -
Seca8g00606 387 Gene3D Transferase(Phosphotransferase) domain 1 152 376 - -
Seca8g00606 387 Pfam Protein tyrosine and serine/threonine kinase 69 347 IPR001245 GO:0004672|GO:0006468
Seca8g00606 387 Gene3D Phosphorylase Kinase; domain 1 40 151 - -
Seca8g00606 387 CDD STKc_IRAK 72 352 - -
Seca8g00606 387 MobiDBLite consensus disorder prediction 356 387 - -
Seca8g00606 387 SUPERFAMILY Protein kinase-like (PK-like) 37 349 IPR011009 -
Seca8g00606 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Seca8g00606 387 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 152 363 - -
Seca8g00606 387 ProSitePatterns Protein kinases ATP-binding region signature. 72 105 IPR017441 GO:0005524
Seca8g00606 387 FunFam Serine/threonine-protein kinase BIK1 32 151 - -
Seca8g00606 387 SMART serkin_6 66 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00606 Seca-Chr8 7299860 7304033 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00606 28 349 Glycoside Hydrolase AT3G07070 49.845 8.97e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca8g00606 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00606 - - gmx:102664409 668.307