Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00605 ATGGCAATTGCAGCCCCAGGGCAACTCAACGTGAGTGAATCTCCCACTTGGGGATCCAGAAGTGTCGATTGCTTCGAGAAGTTGGAGCAAATTGGAGAGGGCACATATGGTCAGGTTTATATGGCTAAAGAAATAAAAACTGGTGAAATTGTCGCTCTGAAGAAAATACGAATGGACAACGAGAGAGAGGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAGAATGTGATCAAGCTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAATAAATACAAAGGTGGAATCTATATGGTCTTTGAATATATGGACCACGATTTAACAGGTCTTGCTGACCGGCCTGGCATGAGGTTTACAGTTCCCCAAATTAAGTGTTACATGAGACAACTTTTGATGGGACTTCACTATTGTCATGTAAATCAAGTGCTTCATCGTGATATCAAAGGCTCAAATCTGCTTATAGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAACGACCAAAATGCAAATCTTACAAATCGAGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTAGGGACAACAAAGTACGGTCCAGCTGTAGATATGTGGTCTGTTGGTTGCATTTTTGCTGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAACTAAATAAAATATTTGAGCTGTGCGGAGCACCGGATGAGGTCAATTGGCCTGGGGTTTCTAAGACACCTTGGTATAATCAATTTAAGCCATCAAGGCCAATGAAAAGACGTTTGAGAGAAGTTTTCAGGCACTTTGATCGTCATGCTCTGGAATTGTTGGAGAGGATGTTGATGCTTGATCCCGCTCAGAGAATTACTGCGAAGGATGCACTCGATGCTGAGTATTTCTGGACAGATCCATTACCATGTGATCCCAAGAGCTTACCCAAGTATGAGTCATCACATGAGTTTCAGACAAAGAAAAAGCGCCAGCAACAACGGCAAAATGAAGAACTGGCTAAGCGTCAGAAAGTGCAACACCCACAGCAGCACACTCGTCTTCCCCCCATTCAGCAGCCTGGCCAACACGCCCAAATGCGGTCAGGACCTAACCAACCACCAATGCATGGCTCTCAACCTCAGGTTGGTGCAGGAGCCACTCATCATTATGGGAAGGCTCGAGGTCCATCTGGTGGGCCAGGAAGATATCCCCCCGGTGGGAACCCTAGTGGAGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGAGGAGGAGGAGCTGGTTATGGCAGTGGGCCTTATCCTCCTCAAGGACGGGGGGCACCTTATGGGTCCAGTAATATGCCTGGTGGTGGTCCTCGTGGTGGAGGTGGCGGTGGCGGTGGCTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCCATATGGGGGTTCAGCAGCTGGTCGCGGCAGCTCCAACATGATGGGTGGAAACCGCAATCAACAGTATGGTTGGCAGCAGTAA 1575 0.4698 MAIAAPGQLNVSESPTWGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLMGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPSRPMKRRLREVFRHFDRHALELLERMLMLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEELAKRQKVQHPQQHTRLPPIQQPGQHAQMRSGPNQPPMHGSQPQVGAGATHHYGKARGPSGGPGRYPPGGNPSGGYNHPNRGGQGGGGGGAGYGSGPYPPQGRGAPYGSSNMPGGGPRGGGGGGGGYGVGAPNYPQQGGPYGGSAAGRGSSNMMGGNRNQQYGWQQ. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00605 524 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Seca8g00605 524 Coils Coil 343 363 - -
Seca8g00605 524 MobiDBLite consensus disorder prediction 508 524 - -
Seca8g00605 524 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00605 524 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Seca8g00605 524 CDD STKc_CDK9_like 25 324 - -
Seca8g00605 524 MobiDBLite consensus disorder prediction 335 524 - -
Seca8g00605 524 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00605 524 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Seca8g00605 524 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Seca8g00605 524 FunFam Cyclin-dependent kinase C-2 122 364 - -
Seca8g00605 524 MobiDBLite consensus disorder prediction 370 399 - -
Seca8g00605 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Seca8g00605 524 FunFam Cyclin-dependent kinase C-2 12 121 - -
Seca8g00605 524 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
Seca8g00605 524 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00605 524 MobiDBLite consensus disorder prediction 337 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00605 Seca-Chr8 7293042 7297568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00605 1 524 Core Cell Cycle Gene Families AT5G10270 77.170 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca8g00605 Pkinase 1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00605 K08819 - gmx:100793565 879.011