Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00599 ATGTCAAGTGAAGCAACACATTGGTGTTATGCTTGCAGTCAGCCAATTGTGCTTGATGGGGGAGATGTTGCTTGTCCTTACTGTGATGGAGGATTTGTACAAGAACTTAATGAGTTGCGAGGTGTTGCTGCACCCCAACATAACTTTTCTTCGCAGTCAGGAGAGTTTCACCAAATGCCTGACATTTTCGATGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGACCAAAGATTTGGGCTTATAGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGACACTCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTGTTCCAGTCCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTATTTAATATTTCATGGCCAAGTTCCTGGATTCACCTTGTCTAATGGCAGCCCAAGAGGTGGTCCCAGGCGTGTTGATTTTGGTGACTATTTTATGGGTCCTGGACTGGAAGAACTCATTGAACAACTCACCATGAATGATCGACGTGGTCCACCCCCAGCTGCGCGATCTTCAATTGACGCAATGCCTACTGTTAGGATCACACAGGCACATCTTCGCTCAGATTCACACTGTCCAGTTTGTAAAGAACAATTTGAACTAGGCTCTGAAGCCAGAGCAATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGAGTTGAGCTGCCACCTCAAGGACAAGGACATGTTAGCTCTCGTGGCAATCGAAGTTGGGGAGGAAGGAATGCCAACAACAGCAGTGACAATGATGGCTCCAGGGTCAGGGATATCCATCAGAACCATGGGAGGAGAAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCTAGTTCAAACAATAGTCATTATTCTGAGACTGGGGGAAGCAGCTCTTCAGCCCCTCCTGACCAGAATAATGGAAGAAGTTATAGTGGATGGCCCTTTGATCACTAA 1002 0.4561 MSSEATHWCYACSQPIVLDGGDVACPYCDGGFVQELNELRGVAAPQHNFSSQSGEFHQMPDIFDAIHAFMGQRGSDQRFGLIDAVDNFMRHRMAGRHSNFDVRGRSGSVPVPEQSWGVYSSGPYLIFHGQVPGFTLSNGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTVRITQAHLRSDSHCPVCKEQFELGSEARAMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQGHVSSRGNRSWGGRNANNSSDNDGSRVRDIHQNHGRRNPLSFLWPFRSSSSNNSHYSETGGSSSSAPPDQNNGRSYSGWPFDH. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00599 333 MobiDBLite consensus disorder prediction 300 327 - -
Seca8g00599 333 Pfam Ring finger domain 200 242 IPR001841 -
Seca8g00599 333 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Seca8g00599 333 MobiDBLite consensus disorder prediction 251 273 - -
Seca8g00599 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 99 246 - -
Seca8g00599 333 MobiDBLite consensus disorder prediction 244 284 - -
Seca8g00599 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Seca8g00599 333 MobiDBLite consensus disorder prediction 300 333 - -
Seca8g00599 333 SUPERFAMILY RING/U-box 181 248 - -
Seca8g00599 333 CDD RING-H2_RNF126-like 201 242 - -
Seca8g00599 333 FunFam E3 ubiquitin-protein ligase RING1-like 165 248 - -
Seca8g00599 333 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Seca8g00599 333 SMART ring_2 201 241 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00599 Seca-Chr8 7220477 7223034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00599 145 258 C3H Transcription Factor Family AT5G01980 43.103 7.18e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00599 K11982 - gmx:100813674 605.905