LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g00562	ATGACTTCTAGAGCTATTGTTCCCCAGGAACAACCCAGAGGTGAGAATAAGCAGAAGAATGTAGCAGCAGAAGGAAGAAACAGACGCGTACTCCAGGATATTGGGAATCTTGTGGCTAAACAAGAGGCTAATGTGTCTAAGCGCATAACAAGGAACTTTTGTGCTCAATTATTGGCTAATGGCCAAGCCGTGGCAGAGAAGAACAAGAAGCCAAGTGCTGCTGAACTGCTGAATGGCACACTAGTTGAAGTTAATGTAGGGAATTTTATCCCTGAAACAAAGGTGGAACTAGCTCAGAAGCCTACAGAACCTGAAGTTATTATCATCAGCTCTGATGATGAATCTGAGGAGGAAGAAGAGAAGGAGACAAAAGCTGTGAAAGGAAGAGAGACAAGAGACAGGAAAAATGGCAAGTCCTACAGTTCAGTCCTCACAGCTCGAAGCAAGGCTGCTTGTGGACTTGCTTATAAGCCAAAGGATTTGGTAGTGGACATTGATGCAACTGACAAGGACAATGAATTGGCTGCAGCAGAATACATTGATGACATCTATATGTATTACAAACTCACTGAAGAGGATGGTTGTGTACATGATTACATGGGTTCACAACCAGATATAAATCCTAAGATGAGATCCATCCTTGTGGATTGGTTGATAGAAGTGCATCGTAAATTTGAACTCATGCCAGAGACTCTCTATCTGGCCATAAATATTGTTGACCGATTCCTGTCCATGAAGGCTGTACCTAGAAAGGAACTTCAGCTGGTTGGTATCAGCTCAATGCTGATAGCCTCCAAATATGAAGAGATTTGGGCACCAGAGGTTAATGACTTTGTATGCATATCAGATAATGCCTATGTTAGAGAACAGGTTCTGGTTATGGAGAAAGCAATCCTGAGAAAGCTTGAATGGTATTTAACCGTTCCCACACCCTATGTCTTCCTGGTTCGGTATATCAAAGCCTCAACTCCCTCTGATAAAGAGATGGAAAACATGGCGTTTTTCCTTGCTGAACTTGGGTTGATGCACTATCCTGTTGTGTCCTTGTATTGTCCTTCTGTGGTTGCTGCTTCTGCTGTATATGCAGCAAGATGTACCCTTGAAAGGAGCCCTTTCTGGACAGAGACTCTGAAGCACTACACAGGCTATTCTGAGGAAAAACTAAGGTAA	1170	0.4299	MTSRAIVPQEQPRGENKQKNVAAEGRNRRVLQDIGNLVAKQEANVSKRITRNFCAQLLANGQAVAEKNKKPSAAELLNGTLVEVNVGNFIPETKVELAQKPTEPEVIIISSDDESEEEEEKETKAVKGRETRDRKNGKSYSSVLTARSKAACGLAYKPKDLVVDIDATDKDNELAAAEYIDDIYMYYKLTEEDGCVHDYMGSQPDINPKMRSILVDWLIEVHRKFELMPETLYLAINIVDRFLSMKAVPRKELQLVGISSMLIASKYEEIWAPEVNDFVCISDNAYVREQVLVMEKAILRKLEWYLTVPTPYVFLVRYIKASTPSDKEMENMAFFLAELGLMHYPVVSLYCPSVVAASAVYAARCTLERSPFWTETLKHYTGYSEEKLR.	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g00562	389	ProSitePatterns	Cyclins signature.	211	242	IPR006671	-
	Seca8g00562	389	CDD	CYCLIN_AtCycB-like_rpt1	159	304	-	-
	Seca8g00562	389	Pfam	Cyclin, N-terminal domain	182	306	IPR006671	-
	Seca8g00562	389	PANTHER	CYCLINS	124	368	IPR039361	-
	Seca8g00562	389	FunFam	G2/mitotic-specific cyclin	195	307	-	-
	Seca8g00562	389	Gene3D	-	196	307	-	-
	Seca8g00562	389	MobiDBLite	consensus disorder prediction	1	26	-	-
	Seca8g00562	389	SUPERFAMILY	Cyclin-like	310	388	IPR036915	-
	Seca8g00562	389	SMART	Cyclin_C_2	309	389	IPR004367	-
	Seca8g00562	389	PIRSF	Cyclin_A_B_D_E	2	389	IPR046965	GO:0016538\|GO:0044772
	Seca8g00562	389	Gene3D	-	182	388	-	-
	Seca8g00562	389	MobiDBLite	consensus disorder prediction	1	16	-	-
	Seca8g00562	389	SUPERFAMILY	Cyclin-like	171	306	IPR036915	-
	Seca8g00562	389	Pfam	Cyclin, C-terminal domain	309	389	IPR004367	-
	Seca8g00562	389	MobiDBLite	consensus disorder prediction	120	137	-	-
	Seca8g00562	389	SMART	cyclin_7	313	389	IPR013763	-
	Seca8g00562	389	SMART	cyclin_7	216	300	IPR013763	-
	Seca8g00562	389	MobiDBLite	consensus disorder prediction	110	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g00562	Seca-Chr8	6674923	6678055	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g00562	14	388	Core Cell Cycle Gene Families	AT2G26760	55.585	1.73e-141	406

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g00562	K21777		-	gmx:547782	549.666