Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00553 ATGGCTTTCACACTAGACAGGTGTGAAGATAACATGAATATGATGTTCACTGTGGAGTCTCAGAAGTCAGTGCCTGCTCCTTTCCTGACAAAGACATACCAGCTTGTTGATGACCCTTGCACAGACCACATTGTGTCTTGGGGTGATGATGAAACTACATTTGTTGTATGGAGGCCTCCTGAGTTTGCTAGAGATCTTCTTCCCAATTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAAAAAAGGAGCTAAGCACCTTTTATGTGAAATCCACAGGAGAAAATCCCCTCAGCACTATCAACAACACTACCATGACCAAATCCAACCACCACAGCTTCTTCAGCCAGATGAGAATCTCTGTTGGATGGATCCTCCATCACCACCTCCTAAATCAGGCACTGATATCTTAACAGCACTTTCTGAGGACAATCAGAGACTGAGGAGAAAGAACCTCATGCTCATATCAGAACTCACTCACATGAAGAATCTGTACAATGACATTATATAA 579 0.4231 MAFTLDRCEDNMNMMFTVESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKSPQHYQQHYHDQIQPPQLLQPDENLCWMDPPSPPPKSGTDILTALSEDNQRLRRKNLMLISELTHMKNLYNDII. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00553 192 FunFam Heat stress transcription factor B-4 20 118 - -
Seca8g00553 192 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g00553 192 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Seca8g00553 192 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 189 IPR027725 -
Seca8g00553 192 Gene3D - 20 118 IPR036388 -
Seca8g00553 192 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g00553 192 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g00553 192 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g00553 192 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca8g00553 192 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00553 Seca-Chr8 6534657 6535539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00553 14 192 HSF AT1G46264 63.592 1.52e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca8g00553 HSF_DNA-bind 9.6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00553 K09419 - gmx:100776060 342.043