Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00546 ATGGGCAATTGTTGCTCAGGTGGCACTGATGACCCTGAGAACAAGGGAGAAACCAACCAACAACAGCATCAAGGCAGCAATGCAGGTGCAGACTCTGCCACCACCCCACCACCCTCATCATCAGCCAAGGCATCCCATCCTCCTTCTAATAATAAGCATTCAAAACCAGCCCCTGTTGGTCCTGTTCTTGGTAGGCCAATGGAGGATGTCAAAGCCACTTACACAATGGGGAAGGAGCTAGGGAGAGGACAATTTGGTGTCACACATTTGTGCACACAAAAAAGCACAGGGAAGCAATATGCATGCAAAACAATAGCCAAGAGAAAGCTTGTGAATAAGGAGGACATAGAGGATGTAAGGAGGGAGGTTCAAATCATGCATCATCTCTCAGGGCAGGCTAATATTGTGGAACTTGTTGGTGCCTTTGAGGATAAACAATCTGTTCATTTGGTGATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATCGTATCATTGCCAAGGGACATTACACTGAACGTGCAGCAGCTTCTTTGATGAGAACCATAGTTCAGATTGTCCACACTTGTCATTCCATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTTTTGTTGAACAAGGATGAGAATGCACCCCTCAAGGCAACAGATTTTGGTCTATCAGTTTTTTACAAGCAAGGAGAGGTGTTTAAAGATATTGTTGGTAGTGCATATTACATTGCACCTGAGGTCTTGAAAAGGAAATATGGACCAGAAGTAGACATTTGGAGTATTGGAGTTATGTTATATATTCTCCTATGGTATATATATCTGCATAACATGAAACTGAAACCAAGATTTGGTTTGACAGAATCCGAAAATGGGATATTCAATGCTATCCTACGAGGCCATATTGACTTCACTAGCGATCCATGGCCCTCCATTTCACCTGCAGCAAAAGATCTTGTAAGGAGAATGTTGAATTCAGATCCAAAGCAGAGGCTAACAGCATACGAAGTTCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCCCCAGATAAACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTAGCTGCCTATCCGAGGAAGAAATCATGGGATTGAAGCAAATGTTCAAGGCGATGGACACTGACAATAGCGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACCAAGTTGACAGAACAAGAAGTTAAGCAATTATTGGAAGCTGCGGATGCTGATGGTAATGGAACCATAGATTACGATGAGTTTATCACAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTCGATAAAGATAATAGCGGGTACATTACCATTGAAGAACTAGAGCAAGCACTCCATGAGTTTAACATGCATGACGGCAGGGACATGAAGGAAATCATTTCAGAAGTCGATGCAGATAATGATGGCCGAATCAACTATGATGAGTTTGTTGCAATGATGAGCAAAGGAAACCCTGAAGCTCATACCAAGAAAAGGCGTGATTCAACCTTGTATTAG 1617 0.4292 MGNCCSGGTDDPENKGETNQQQHQGSNAGADSATTPPPSSSAKASHPPSNNKHSKPAPVGPVLGRPMEDVKATYTMGKELGRGQFGVTHLCTQKSTGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQANIVELVGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLMRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLWYIYLHNMKLKPRFGLTESENGIFNAILRGHIDFTSDPWPSISPAAKDLVRRMLNSDPKQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIASCLSEEEIMGLKQMFKAMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLLEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGYITIEELEQALHEFNMHDGRDMKEIISEVDADNDGRINYDEFVAMMSKGNPEAHTKKRRDSTLY. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00546 538 Gene3D Transferase(Phosphotransferase) domain 1 160 348 - -
Seca8g00546 538 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Seca8g00546 538 ProSiteProfiles Protein kinase domain profile. 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00546 538 SMART serkin_6 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00546 538 FunFam Calcium-dependent protein kinase 1 76 159 - -
Seca8g00546 538 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Seca8g00546 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 69 516 - -
Seca8g00546 538 Pfam Protein kinase domain 74 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00546 538 SMART efh_1 495 523 IPR002048 GO:0005509
Seca8g00546 538 SMART efh_1 460 488 IPR002048 GO:0005509
Seca8g00546 538 SMART efh_1 388 416 IPR002048 GO:0005509
Seca8g00546 538 SMART efh_1 424 452 IPR002048 GO:0005509
Seca8g00546 538 SUPERFAMILY Protein kinase-like (PK-like) 51 371 IPR011009 -
Seca8g00546 538 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Seca8g00546 538 SUPERFAMILY EF-hand 381 521 IPR011992 -
Seca8g00546 538 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Seca8g00546 538 CDD STKc_CAMK 74 340 - -
Seca8g00546 538 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Seca8g00546 538 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Seca8g00546 538 ProSitePatterns Protein kinases ATP-binding region signature. 80 107 IPR017441 GO:0005524
Seca8g00546 538 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Seca8g00546 538 FunFam calcium-dependent protein kinase 1 160 348 - -
Seca8g00546 538 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Seca8g00546 538 Gene3D - 349 527 - -
Seca8g00546 538 MobiDBLite consensus disorder prediction 12 52 - -
Seca8g00546 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Seca8g00546 538 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Seca8g00546 538 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Seca8g00546 538 ProSiteProfiles EF-hand calcium-binding domain profile. 495 526 IPR002048 GO:0005509
Seca8g00546 538 MobiDBLite consensus disorder prediction 1 65 - -
Seca8g00546 538 FunFam Calcium-dependent protein kinase 1 349 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00546 Seca-Chr8 6485011 6488279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00546 1 537 EF-hand Containing Proteins AT5G12180 78.585 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca8g00546 Pkinase 3.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00546 K13412 - gmx:100820422 912.138