Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00545 ATGCTTGGGTGGGTGAAAAAGGGGCAAATGGTTCCTGAATTTGAGGAGGCTGCATTTAGTGCAACTTTAAACAAAGTTGTAAGGTGCAAAACACAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCATTACTTCAAGACATTCAACCTGATGAGTTGCATGTGAAAATTCAAGATCCCAACTTTTTGGAGGAGACACAGTTAATTGATGTTCGAGAGCCTGAAGAAGTGGCCAAAGCATCTTTGCCAGGATTTACGGTTCTTCCCCTCAGACAATTTGGAAGCTGGGGGCCTGAAATAACTTCCAAATTTGACCCTCAAAAGGATACATATGTTATGTGTCATCATGGCGTGCGGTCATTACAGGTGGCCAAGTGGTTACAATCACAGGGTTTTAGGAAAGTATACAATCTTTCAGGGGGAATCCATGCCTATGCTGTCCAGGTTGATCCATCAGTCCCCACTTACTGA 483 0.4348 MLGWVKKGQMVPEFEEAAFSATLNKVVRCKTQFGWHLLQVLSEREESLLQDIQPDELHVKIQDPNFLEETQLIDVREPEEVAKASLPGFTVLPLRQFGSWGPEITSKFDPQKDTYVMCHHGVRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY. 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00545 160 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 1 42 IPR000297 GO:0003755
Seca8g00545 160 Gene3D - 1 45 IPR046357 GO:0003755
Seca8g00545 160 Gene3D - 46 157 IPR036873 -
Seca8g00545 160 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 48 158 IPR036873 -
Seca8g00545 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 160 - -
Seca8g00545 160 SUPERFAMILY FKBP-like 2 42 - -
Seca8g00545 160 SMART rhod_4 52 155 IPR001763 -
Seca8g00545 160 Pfam Rhodanese-like domain 57 150 IPR001763 -
Seca8g00545 160 ProSiteProfiles Rhodanese domain profile. 66 158 IPR001763 -
Seca8g00545 160 Pfam PPIC-type PPIASE domain 2 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00545 Seca-Chr8 6478708 6482868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00545 1 160 Sulfurtransferasese or Rhodanese AT5G19370 70.000 2.24e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00545 - - aprc:113846694 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00545 8 6478708 6482868 Seca8g00545 8 6478708 6482868 ECH