Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00539 ATGGCTCAACTCTCAAATTGGAGCGGGCAGGCCAGCATGTTGCAGTCACCGGCCCAACCAAACGTAGCCAGAGCCATGTTCCACCACCTTGGTGTTCCCACTTGGGTCACAAGCTGGCGCTACCCAACTCGACATTCTGACATGCATGTCAGAAAGCTTATAAAGACTGCTCTGTGTCATACTCTAAACGATGCGGGACTTGGGGATCCAACTATCTCCATTGGTGCTAAAGTCACAGAATATTTGCTTAGACCAACAATACAAGGAAAATACTTGTTTGATGTTGGACAAATCATCAAAGATCTTGAAGATAAAAAGAAAGAGCTGATATTAACAAGAGACAATGTGCAGAATCGTGTTGAAGAAGCTAAGAAGAAAACTGAAAAAATTGAAGGTGCTGTTGAAATATGGTTGAGTGAAGTGAAGAGTCTCCTAGAAGAGGTGGAGAGCCTGGAACATGAAATGAGGGAAAACAACAGTTGTCTTCCAGATTTTCACGCCTGGCTACACTTCCAAGTTCCAAGCATTGAATATTTCTCTTCTGGTCACTTCACATATTTTGAATCAACAAAGTCAGCTTACAATCAACTTTTGGAGGCAATGCAAGATGATGGTAGCTATATGATAGGCTTGTATGGGATGGGAGGATGTGGAAAAACAACCCTTGTAAAAGAAATGGGTAAAAAAGCTAAGGAGTTGAAGCTTTTTGATCAAGTTGTGTTTGCAACTGTATCCCAAACTCCAAATGTTGGGAGGATTCAAGATGAAATTGCTGACTTGTTGGGTTTGACATTGGTTGAAAAAAGGGAGCCAGGAAGAGCAAGACGAATATCACTCAGATTACAAGATGGTGAAAGAATTCTTTTGATCTTGGATGATGTTTGGGCAAGACTTAGTCTTGAGGATATAGGAATTCCTTTGAATGCTGATTCCAGAAACTGCAAGGTCCTTCTAACCACTAGGCGCCAACAAGTATGTACTCTAATGGAGTGTCAAAGAAAGATTCCACTATATCTCTTATCTGAGCAGGAATCTTGGATTTTGCTCCAAAAACATGCTTGTATTGATAATGATTCCTCCACTAGCTTGTTAAATGGACTAGCAGAGGGAGTTGTTAAGGAATGTAAAGGACTGCCCCTAGCAATTGAAACTGTGGGGATGTCCTTGAGAGGGAAATCTGTTCATGACTGGAAGATTGCTTTAGATAGATTGAAGAATTCAAAGCCACTAGATATTGAAGAAGGTGTGAGAGATATTTTTGCATGCCTGCAACTAAGTTATGATTATCTGGGAAGTAGGTTGGCCAAGTCACTCTTCTTGATATGTGGTCTTTTTCCAGAAGAGCACAGGATCCCTATTGAAGATTTATTTAGATTTGGAGTGAGGCTGGGTTTCTGTGGTGAAGTTGAATCATTTGACATAGCTAGGAGCCGGGTAAATGCCACTATAAACAAGCTCATAGATTCTTGTCTATTGATGCATTGTGAGGAGAGTAAACATGAAGTAAAGATGCATGATGTGGTTCGGGATGTGGCTCTTTGGATAGCATCCCAAGAGGGCTCTGTCATCAATGTAAATCAAGCAAAAGCAAAGGCAAAGGCAAGGGATTGTTTTGCAATGTGTTCATGGTATGAGAAAATAGATGAACTTCCTAATCAACTTGATGCTCCCAAGCTTGAGGTTCTGCTAATACACACTGTAAGTTCCCTGAAGCTATCAAACGCAACTTTTGAAGGCATTAAAGGGCTCAAGGTTATGAGTTTAGTTTGTAGAAAAGATAACGAGAGAGTATCCCTATCACTGCCGCTGTCAATCCACCTGTTGACTAATCTTTGTAGTCTAAGCTTGGTAGGCTGGAAATTGGGTGATATCTCTTCCCTGGTAAGGTTAGGAGGACTAGAAATTCTTGATTTGCACAGAAGTGGCTTCAAGGAAGTGCCAAATGGAATTGAAGATGTAAAAAAATTGAAGTTGCTGGATTTGTCAGAATGTGAAATTGAAGAAGATTGTTATGGAGCTATAGCAAGATGTTCACAGCTAGAAGAGTTATATGTCTTTGGAAGAGACAGAAACTTTGGAAGTACAGATTCACATGAATGCTTTTCGGATAGTTCTAATTACCCAAAATTGCAGTTGCAAAGGTATGTATTACAGATAGGGCCTTATAAAGGACCTGTAATTGTGAACCTTGAACTAGAAATAGAAAGCAATCCAAGAATTCTATATATAGAGGAGTTGAATACCTCTACCATAAGTGCAATAACAAAGGATCTTCTCCAGAGAGCAGCAAAACTGTATTTGGGGGATCTTTGTGGAGGTTGCAAAAATATTATCCCAACAATGTTTCGTGCTGTAGGAGGCATGAATCAGTTAACTAGCCTTAGACTTAATCACTGCTCAGAAATAGAGTCCATTATTGATACAACCTCCACTCAAGCAGATTCATTTCAAGCAGATGCTGACCTCCTCAGATTGGTTGTGTTAGAGCTCAGAAGTATGGATGGCTTGAAACAACTGTGTCATGGTCCACCATCACTTAGCTTTTTCCAAAACTTAAGACGACTTGATTTATGGAAGTGCCAGCTGCTGTGTAACATTTTTCCAAGGGAATGCAACTTGTGCAATCTTGAGGTCCTAGAAATATATGATTGTCCAACGTTGGTATCATTGTTCCCAATGTCTGTTGCTAGAACTCTGCTACAGCTACAAGATTTGTATATCGATAGATGCTGCAAGCTGGAACAAATAATAGTGAATGACGAGGAAATATCTCAAGTTTCAGAGAATTCTTGTTTGATGTTCCCCAAATTGAAGACATTGTTCGTGGATTCTTGTGACAAGTTAGAATATATATTTCCAATCCATTGTGTTCAAGGCCTTGTGCAACTAGAGAGTATAAATATAGGTCGGTCCTCAGAGCTGAAATATATTTTTGGTCAGCATGAGAATCGGGATGAGTCATCTTATCAGAACCAGATGCACACTGAACTTCCTGTTTTGAAAGAAGTTAGACTTCAGGGCCTTCCTAATCTGCTTAGCATTTCTCCCAAAAATTCTCATTTAAGGTGGCCATCTCTAAGGGAAATAGACTGTGAAGCTTGCCCCAACTTGAGCACTTTGGATAACTTAGGGTTTAGGGTTTAG 3144 0.4011 MAQLSNWSGQASMLQSPAQPNVARAMFHHLGVPTWVTSWRYPTRHSDMHVRKLIKTALCHTLNDAGLGDPTISIGAKVTEYLLRPTIQGKYLFDVGQIIKDLEDKKKELILTRDNVQNRVEEAKKKTEKIEGAVEIWLSEVKSLLEEVESLEHEMRENNSCLPDFHAWLHFQVPSIEYFSSGHFTYFESTKSAYNQLLEAMQDDGSYMIGLYGMGGCGKTTLVKEMGKKAKELKLFDQVVFATVSQTPNVGRIQDEIADLLGLTLVEKREPGRARRISLRLQDGERILLILDDVWARLSLEDIGIPLNADSRNCKVLLTTRRQQVCTLMECQRKIPLYLLSEQESWILLQKHACIDNDSSTSLLNGLAEGVVKECKGLPLAIETVGMSLRGKSVHDWKIALDRLKNSKPLDIEEGVRDIFACLQLSYDYLGSRLAKSLFLICGLFPEEHRIPIEDLFRFGVRLGFCGEVESFDIARSRVNATINKLIDSCLLMHCEESKHEVKMHDVVRDVALWIASQEGSVINVNQAKAKAKARDCFAMCSWYEKIDELPNQLDAPKLEVLLIHTVSSLKLSNATFEGIKGLKVMSLVCRKDNERVSLSLPLSIHLLTNLCSLSLVGWKLGDISSLVRLGGLEILDLHRSGFKEVPNGIEDVKKLKLLDLSECEIEEDCYGAIARCSQLEELYVFGRDRNFGSTDSHECFSDSSNYPKLQLQRYVLQIGPYKGPVIVNLELEIESNPRILYIEELNTSTISAITKDLLQRAAKLYLGDLCGGCKNIIPTMFRAVGGMNQLTSLRLNHCSEIESIIDTTSTQADSFQADADLLRLVVLELRSMDGLKQLCHGPPSLSFFQNLRRLDLWKCQLLCNIFPRECNLCNLEVLEIYDCPTLVSLFPMSVARTLLQLQDLYIDRCCKLEQIIVNDEEISQVSENSCLMFPKLKTLFVDSCDKLEYIFPIHCVQGLVQLESINIGRSSELKYIFGQHENRDESSYQNQMHTELPVLKEVRLQGLPNLLSISPKNSHLRWPSLREIDCEACPNLSTLDNLGFRV. 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00539 1047 SUPERFAMILY L domain-like 503 910 - -
Seca8g00539 1047 PRINTS Disease resistance protein signature 208 223 - -
Seca8g00539 1047 PRINTS Disease resistance protein signature 375 389 - -
Seca8g00539 1047 PRINTS Disease resistance protein signature 651 667 - -
Seca8g00539 1047 PRINTS Disease resistance protein signature 281 295 - -
Seca8g00539 1047 Gene3D - 170 335 IPR027417 -
Seca8g00539 1047 Gene3D Ribonuclease Inhibitor 513 715 IPR032675 -
Seca8g00539 1047 Pfam NB-ARC domain 194 428 IPR002182 GO:0043531
Seca8g00539 1047 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 94 951 - -
Seca8g00539 1047 Gene3D - 427 512 IPR036388 -
Seca8g00539 1047 Gene3D - 339 426 IPR042197 -
Seca8g00539 1047 Gene3D Ribonuclease Inhibitor 917 1044 IPR032675 -
Seca8g00539 1047 Coils Coil 99 154 - -
Seca8g00539 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 442 IPR027417 -
Seca8g00539 1047 Gene3D Ribonuclease Inhibitor 729 912 IPR032675 -
Seca8g00539 1047 FunFam Probable disease resistance protein At1g61300 186 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00539 Seca-Chr8 6446823 6452245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00539 209 519 WRKY Transcription Factor Family AT5G45050 25.776 3.48e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00539 - - lang:109341976 868.611