Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00533 ATGGAAGAAAATAGATGTGCACCCTTTCTCTCCCCAACCTCAAACACTAACAGCTCGGGGTACATTATTTCCCTTTCCAATGAGAACAATTGCGAGCTAATTCCACCTCCACCACCACCACCACCACCACCGTCCTTTGCTGTAGGGCATGAAATCAAGGAGAAGGAGAATTTGAACACAACCTCCATCTCCAAGATACCAATTGGGAGGCCACTTAGCTCCGAGAATAATTCCAAGCCACCCATCCCCATCAAACCAGACAACAACCAACTCTTAAAACAAATCATTATTGAAATTCCTGCAGGACACGATGTTATCGATGTCCTCACCGGCTACGCTCATCGCCATCGTGTCGGCATCTCAGTGTTGAGTGTGGTTGGTTATGTTTCTGATGTTACCCTTCACCACCCTTTATGTCGTCTCCAAGGACACTTCAATATGGTCTCTCTCACTGGTACTTACATGAGTGGTCATTTTCCACCTTCTACTTCCATCCCTCCTTTGTCCAATTTTTCAATTCAACTATCTGATTATCCAGGCCGATTGTTCGGTGGGGTTGTTGGAGGGAAGGTTGTGGCCGCAGGTCTTGTGATGGTCAAGGCATTAATTTTCAAGAAAATCGAGTACCACAACACATTCTTAATCAATGGAAGTGTTGAAGTTGAAGACGGTGAGGTTAGTGTTGATGCAGGTGAACGCAGCAACATCACCAACACCAATACTACCATTTCCATGCCCAATAATATGTCAGCTTTTGGTGTTGGCACCAATTCAATCTAG 780 0.4513 MEENRCAPFLSPTSNTNSSGYIISLSNENNCELIPPPPPPPPPPSFAVGHEIKEKENLNTTSISKIPIGRPLSSENNSKPPIPIKPDNNQLLKQIIIEIPAGHDVIDVLTGYAHRHRVGISVLSVVGYVSDVTLHHPLCRLQGHFNMVSLTGTYMSGHFPPSTSIPPLSNFSIQLSDYPGRLFGGVVGGKVVAAGLVMVKALIFKKIEYHNTFLINGSVEVEDGEVSVDAGERSNITNTNTTISMPNNMSAFGVGTNSI. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00533 259 ProSiteProfiles PPC domain profile profile. 88 225 IPR005175 -
Seca8g00533 259 MobiDBLite consensus disorder prediction 65 84 - -
Seca8g00533 259 Gene3D - 92 220 - -
Seca8g00533 259 MobiDBLite consensus disorder prediction 65 85 - -
Seca8g00533 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 211 - -
Seca8g00533 259 CDD DUF296 95 183 IPR005175 -
Seca8g00533 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 204 IPR005175 -
Seca8g00533 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 57 229 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00533 Seca-Chr8 6402588 6403367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00533 63 211 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.177 1.18e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00533 - - aprc:113857474 113.235