Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00532 ATGATTTCCCTTTCCAATGAGAACAATTGCGAGCTAATTCCACCTCCACCACCACCGTCCTTTGCTGTAGGGCATGAAATCAAGGAGAAGGAGAATTTGACCACAACCTCCATCTCCAAGATACCAATTGGGAGGCCACTTAGCTCCGAGAATAATTCCAAGCCACCCATCCCCATCAAACCAGACAACAACCAACTCTTAAAACAAATCATTATTGAAATTCCTGCAGGACACGATGTTATCGATGTCCTCACCGGCTACGCTCATCGCCATCGTGTCGGCATCTCAGTGTTGAGTGTGGTTGGTTATGTTTCTGATGTTACCCTTCACCACCCTTTATGTCGTCTCCAAAGACACTTCAATATGGTCTCTCCCACTGGTACTTACATGAGTGGTCATTTTCCACCTTCTACTTCCATCCCTCCTTTGTCCAATTTTTCAATTCAACTATCTGATTATCCAGGCCGATTGTTCGGTGGGGTTGTTGGAGGGAAGGTTGTGGCCGCAGGTCTTGTGATGGTCAAGTCATTAATTTTCAAGAAAATCGAGTACCACAACGCATTCTTAATCAATGGAAGTGTTGAAGTTGAAGACGGTGAGGTTAGTGTTGATGCAGGTGAACCCAGCAACATCACCAACACCAATACTACCATTTCCATGCCTAATAATATGTCAGCTTTTGGTGTTGGCACCAATTCAATCTAG 705 0.4468 MISLSNENNCELIPPPPPPSFAVGHEIKEKENLTTTSISKIPIGRPLSSENNSKPPIPIKPDNNQLLKQIIIEIPAGHDVIDVLTGYAHRHRVGISVLSVVGYVSDVTLHHPLCRLQRHFNMVSPTGTYMSGHFPPSTSIPPLSNFSIQLSDYPGRLFGGVVGGKVVAAGLVMVKSLIFKKIEYHNAFLINGSVEVEDGEVSVDAGEPSNITNTNTTISMPNNMSAFGVGTNSI. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00532 234 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 203 IPR014476 GO:0003680
Seca8g00532 234 ProSiteProfiles PPC domain profile profile. 63 200 IPR005175 -
Seca8g00532 234 MobiDBLite consensus disorder prediction 41 60 - -
Seca8g00532 234 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 178 - -
Seca8g00532 234 MobiDBLite consensus disorder prediction 41 59 - -
Seca8g00532 234 Pfam Plants and Prokaryotes Conserved (PCC) domain 69 174 IPR005175 -
Seca8g00532 234 Gene3D - 67 190 - -
Seca8g00532 234 CDD DUF296 70 158 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00532 Seca-Chr8 6377382 6378086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00532 34 186 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.099 1.02e-21 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00532 - - fve:101309801 98.5969