Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00531 ATGATTTCCCTTTCCAATGAGAACAATTGCGAGCTAATTCCACCTCCACCACCACCACCACCACCACCGTCCTTTGCTATAGGGCATGAAATCAAAGAGAAGGAGAATTTGACCACAACCTCTATCTCCAAGATACCAATTGGGAGGCCACTTAGCTCCGAGAATAATTCCAAGCCACCCATCCCCATCAAACCAGACAACAACCAACTCTTAAAACAAATCATTATTGAAATTCCTGCAGGACACGATGTTATCGATGTCCTCACCGGGTACGCTCATCGCCATCGTGTCGGCATCTCGGTGTTGAGTGTGGTTGGTTATGTATCTGATGTTACCCTTCACCACCCTTTATGTCGTCTCCAAGGACACTTCAATATGGTCTCTCTCACTGGTACTTACATGAGTGATCATTTTCCACCTTCTACTTCCATCCCTCCTTTGTCCAATTTTTCAATTCAACTATTTGATTATCCAGGCTGA 480 0.4479 MISLSNENNCELIPPPPPPPPPPSFAIGHEIKEKENLTTTSISKIPIGRPLSSENNSKPPIPIKPDNNQLLKQIIIEIPAGHDVIDVLTGYAHRHRVGISVLSVVGYVSDVTLHHPLCRLQGHFNMVSLTGTYMSDHFPPSTSIPPLSNFSIQLFDYPG. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00531 159 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 136 IPR005175 -
Seca8g00531 159 CDD DUF296 74 144 IPR005175 -
Seca8g00531 159 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 154 IPR014476 GO:0003680
Seca8g00531 159 Gene3D - 71 154 - -
Seca8g00531 159 MobiDBLite consensus disorder prediction 11 26 - -
Seca8g00531 159 MobiDBLite consensus disorder prediction 1 64 - -
Seca8g00531 159 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 140 - -
Seca8g00531 159 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00531 Seca-Chr8 6359186 6359665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00531 43 143 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 36.842 7.39e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00531 - - aprc:113857474 93.5893