Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00529 ATGGAGAATTTGACCACAACCTCCATCTCCAAAAGACCAATTGGGAGGCCACTTAGCTCCAAGAATAATTCCAAGCCACCCATCCCCATCAAACAAGACAACGACCAACTCTTTAAACAAATTATTATTGAAATTCCTTCAGGAGACGATGTTATTGATGTCCTCACCGAGTACGCTCATCGCCTTCGTGTCGGCATCTCGGTGTTGAGTGTGGTTTGTTATGTATCTGATGTTACCCTTTACCACCCTTTATGTAGTCTCCAAGGACACTTCAATATGGGACACTTCAATATGGTCTCTCTCACTGGTACTTACATGAGTGGTCATTTTCCACCTTCTACTTCCATCCCTCCTTTGTCCAATTTTTCAATTCAACTATCTGATTATCTAGGCCGATTGTTAGGTGGGGTTGTTGGAGGGAAGGTTTTGGCTGCGGGTCTTGTGGTGGTTAAGGCATTAATTTTCAAGAAAATCGAGTACAACAGCGCGTTCTTAATCAATGGAAGCATTGAAGTTGACGACGGTGAGCTTAATGTTGATGCAGGTGAACCCTGCTGA 558 0.4355 MENLTTTSISKRPIGRPLSSKNNSKPPIPIKQDNDQLFKQIIIEIPSGDDVIDVLTEYAHRLRVGISVLSVVCYVSDVTLYHPLCSLQGHFNMGHFNMVSLTGTYMSGHFPPSTSIPPLSNFSIQLSDYLGRLLGGVVGGKVLAAGLVVVKALIFKKIEYNSAFLINGSIEVDDGELNVDAGEPC. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00529 185 Gene3D - 38 167 - -
Seca8g00529 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 9 162 IPR014476 GO:0003680
Seca8g00529 185 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g00529 185 Pfam Plants and Prokaryotes Conserved (PCC) domain 40 155 IPR005175 -
Seca8g00529 185 SUPERFAMILY AF0104/ALDC/Ptd012-like 38 161 - -
Seca8g00529 185 ProSiteProfiles PPC domain profile profile. 34 180 IPR005175 -
Seca8g00529 185 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00529 Seca-Chr8 6288613 6296459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00529 5 161 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.802 6.92e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00529 - - aprc:113857474 103.605