Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00518 ATGGCTGAAAATGGGTATCCTAACTCTCTCTCCCCTGCCTCAGACAATGACTCCTCTCAGCACAACCCAGGGAGCTTCGCCACTCTATCTGGTGGCTCCTCCATCTTTAGTAGAGGTAACAACAATGACAACCTTCTGCCAAACCAACCACCACCACCACCATCACCCTCCTCTGTCGGAGTCCTCCCAAAGGATGAGGATATGAACACACCCCCTAACTCCAAGAGGCCAAGGGGAAGGCCACCTGGTTCCAAGAACAAGCCCAAGCCACCCCTCATCGTCAAGCAAGACACTGATGAGTTCCTTAAACCAGTTCTCATCGAAATTCCTGCTGGACACGACGTTGTGGAAGCTATCATCGCCTTCGCTAACCGGCGTCGTGTCAACATCTCAGTGTTGAGTGGTTCGGGTTCTCTCTCTGAGGTTACAATTTGCCAAAATCAGTCTCGTTCTCCTTCTTTCCCTCTCAAGGGAGACTTTAACATGATTTCTCTTACTGGCACTTACATGAGTGGTAGTTTCCCTCCACTCTCCATTCCCAACCCTATTTGTTCCTCCTTCATGATTTACGTATCTGGGAACCAAAACCAGATGTTGGGTGGGGTTGTTGCAGGGAAGGTTGTGGCTTCAGGTCTTGTGGTTGTTATGGTCGCAGTGTTCAAGAAATCTGAGTACCACAAGGTGCCTTTTATCAATGGAACTATTGAGGAAGCCAATGAAGATAATGATGCCATATATGTGGCTATGATCAATGCTGATGTGGGTGAACCTAGTGGTATTACCAACAACATCAACAACAACAATGGCATGGCAATGCCCAATATGTCTGCTTTTAATGTTGCTGCTGCTAATTCAACTCCTTTGTTGACTCATCCTATTCCTTCTGATATGAATGTCATGCAGTGGAACCGCTACGATAATCATTAG 927 0.4703 MAENGYPNSLSPASDNDSSQHNPGSFATLSGGSSIFSRGNNNDNLLPNQPPPPPSPSSVGVLPKDEDMNTPPNSKRPRGRPPGSKNKPKPPLIVKQDTDEFLKPVLIEIPAGHDVVEAIIAFANRRRVNISVLSGSGSLSEVTICQNQSRSPSFPLKGDFNMISLTGTYMSGSFPPLSIPNPICSSFMIYVSGNQNQMLGGVVAGKVVASGLVVVMVAVFKKSEYHKVPFINGTIEEANEDNDAIYVAMINADVGEPSGITNNINNNNGMAMPNMSAFNVAAANSTPLLTHPIPSDMNVMQWNRYDNH. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00518 308 MobiDBLite consensus disorder prediction 1 95 - -
Seca8g00518 308 ProSiteProfiles PPC domain profile profile. 99 241 IPR005175 -
Seca8g00518 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 229 - -
Seca8g00518 308 Gene3D - 102 239 - -
Seca8g00518 308 MobiDBLite consensus disorder prediction 1 45 - -
Seca8g00518 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 221 IPR005175 -
Seca8g00518 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 58 251 IPR014476 GO:0003680
Seca8g00518 308 CDD DUF296 103 220 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00518 Seca-Chr8 6156747 6157694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00518 75 229 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 41.875 8.30e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00518 - - lang:109328424 196.052