Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00515 ATGGGTATGTTTGTTATGGCACCACCTTCTTCTTTCAACAACAACACCAACAACAACCCTCTCCTCTCCGATCCTCATTCCCTCAACCCCGCCACCGCTCTCGGCGTCGGTGTCATCCCTCTCCTCACTGCTTCCCCTTGCATAGAAACCACCACCACCAACATGCTTAGTAATAACAGAAGACAACAACAACAACAAGGAATAATTCATCAGTTTTGGCAGGAACAACAACAGCAGCAGCAAGGGAATTTAAATTTACTTCATGCTGGTTCTGGTTCTGTTGCAACGAACAGTAATAGTGGTGGTGGAGGAGGAGGAACTACGTGCCAAGATTGTGGAAACCAAGCAAAGAAAGATTGTACTAATAGAAGGTGTAGGACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGCACTTGGGTTCCTGCTTCTAGGAGAAGAGAACGACAACTTATGGCGGCGGCCGCGGCGGCGGTTGCTGGCTCCACCGGGTCTAGCTCTGGTTCCAAGAAACCTAGACTTATTACTTCACAAACTACCACTACTTCTCATACTTCAACTTCTAACACAACCCCTCCTAGAAGCTTTGACACTGGCTCTAGCCATCAAGATGCGAGTTTTAAAGAGTCAATGCCTGGTCAAGTACGTGCACCAGCAGTATTCAAGTGTGTGAGAGTGACGGCGGTGGAAGATGGGAAGGATGAGTATGCATATCAAGCTGTGGTGAAGATTAATGGTCATGTGTTTAAAGGGTTTCTTTATGATCAAGGGGTTGAGAGTAGAGATCATGTGTATCCTAATTTATCTGAGTTGCATTTAGGTGGAAGTGGAAGTGGAAGTGTTGGGAGAAATAATGGGATTTCATCTTCATCACCAGTGATGGATCCATCTGATGTTTATGCAGGTGGAGGAGGAGGGTTACTTGGAGGAGGTTCAACCTATGGTGGTAATATCCAATAA 972 0.4547 MGMFVMAPPSSFNNNTNNNPLLSDPHSLNPATALGVGVIPLLTASPCIETTTTNMLSNNRRQQQQQGIIHQFWQEQQQQQQGNLNLLHAGSGSVATNSNSGGGGGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPASRRRERQLMAAAAAAVAGSTGSSSGSKKPRLITSQTTTTSHTSTSNTTPPRSFDTGSSHQDASFKESMPGQVRAPAVFKCVRVTAVEDGKDEYAYQAVVKINGHVFKGFLYDQGVESRDHVYPNLSELHLGGSGSGSVGRNNGISSSSPVMDPSDVYAGGGGGLLGGGSTYGGNIQ. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00515 323 MobiDBLite consensus disorder prediction 156 215 - -
Seca8g00515 323 NCBIfam LRP1 C-terminal domain 215 262 IPR006511 -
Seca8g00515 323 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 47 305 IPR007818 GO:0003700|GO:0006355
Seca8g00515 323 MobiDBLite consensus disorder prediction 164 212 - -
Seca8g00515 323 Pfam Domain of unknown function (DUF702) 106 263 - -
Seca8g00515 323 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00515 Seca-Chr8 6080613 6082497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00515 34 303 C2H2 Transcription Factor Family AT5G12330 56.631 8.15e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca8g00515 DUF702 7.5e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00515 - - vun:114194574 358.221