Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00511 ATGGAAGAATCAGGTGAATTGCAATCAGAAGAAAATAAAGTCTCTGCAGAGAAAAATAAAAAAAGAAAGCTCAAAACACCTGCCCAGGTTATAGCCTTGGAGAAATTTTATGATGAGCATAAATATCCGACAGAGGAAATGAAATCAGAACTTGCTGCGGAGTCAGGGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAATCAGCTGCCAATGGACGACAAGATCGTTCGAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGACAAGATTCATGTGGAAGCAGTAAATATGGTGATCATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGGCCTCCACAATCATGATTTTCCAGTTGCAGATGTGACCTACGGACGTATGAATCATTATCCAGAAAATGTTAGCGAAATGGATGACACATCATCTGAGAGCTCATTTCTGCCAGAACGGTTTTCTCAAGGCCAGGATCTCTACGATACGGAGCCTTCTAGATATCTAACACCTAGCAGAACTCTTCCACCCCTAAATCCCAAGGGTGCAATTAACATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCCGTTAAGAAGCAATTAGGAAGGCATTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCTACTTCCTCCAGGGGCATTTGAAGGCCAAATCGAAGATCCAGTTCATGAACCATACTGTGTTGCGAATCCTGCTCTTCCAAATTCTCCAGAAATTTCTGCTGTAAAAAGACGACCCAGTGTTAGCTCTAGATATGATTCGTATTATACTAAATTTAGTTCCCAAGATTCACATATGGAGGGAGTTGATTTTGGCTCCTTGCATGACTCTGATGTCCAGGATAAACAACATAAGAAAGCCCGCCAGGATATGAAACACAGGCAAACTTTTCACAGTCATACCAATCATTTTCCTGGCAGGAACTCTTCCCTGGATTTGTATGAAGATTCTACAGGTGAAGCTTCTGCTTACAAAAGCACTAAGAATCATAGGATGGGCACCAAGCATGGTGTTGAGGGGATGAGATCTAATTCTGCTTCTAATCATAGTGATCATTATGAAGAAAACCTTGCAGTTAAGCAGAAAGACTTTCTGCCACATGGCAATGCTAACATCAATCAGAAGAATGTGCAAAGGAATGAACATGTAAAATATAAGCCTTCAAATTCAATCCGTAATCCTCGAGTTTCTGTGGATACTGAAGAAAGAGGGCTATCTAATAGAGTCGCAAAGGAAGAGATGTTTAAGGCAGGTAGGAAGGCAAAAAAACAATACCGCAATGCCGATGGAGCAGGGATGTTTCCAAATGAAATTATGGTGAGTTTAGATGTGTAA 1434 0.4086 MEESGELQSEENKVSAEKNKKRKLKTPAQVIALEKFYDEHKYPTEEMKSELAAESGLTEKQISGWFCHRRLKDKRLLKDESAANGRQDRSSGVIQDRGSGLGQDSCGSSKYGDHKYLDPKEVESHGLHNHDFPVADVTYGRMNHYPENVSEMDDTSSESSFLPERFSQGQDLYDTEPSRYLTPSRTLPPLNPKGAINMGYKPSGYLKVKGEIENAAITAVKKQLGRHYREDGPLLGVEFDLLPPGAFEGQIEDPVHEPYCVANPALPNSPEISAVKRRPSVSSRYDSYYTKFSSQDSHMEGVDFGSLHDSDVQDKQHKKARQDMKHRQTFHSHTNHFPGRNSSLDLYEDSTGEASAYKSTKNHRMGTKHGVEGMRSNSASNHSDHYEENLAVKQKDFLPHGNANINQKNVQRNEHVKYKPSNSIRNPRVSVDTEERGLSNRVAKEEMFKAGRKAKKQYRNADGAGMFPNEIMVSLDV. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00511 477 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Seca8g00511 477 SMART HOX_1 18 80 IPR001356 GO:0003677
Seca8g00511 477 MobiDBLite consensus disorder prediction 78 116 - -
Seca8g00511 477 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Seca8g00511 477 Gene3D - 8 92 - -
Seca8g00511 477 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 474 - -
Seca8g00511 477 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g00511 477 CDD homeodomain 20 75 IPR001356 GO:0003677
Seca8g00511 477 MobiDBLite consensus disorder prediction 86 106 - -
Seca8g00511 477 MobiDBLite consensus disorder prediction 7 25 - -
Seca8g00511 477 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00511 Seca-Chr8 5906733 5912689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00511 3 277 Homeobox Transcription Factor Family AT4G03250 53.791 5.25e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca8g00511 Homeodomain 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00511 - - gmx:100803515 752.666