Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00502 ATGGCTTTCTTTAGGAACTTTTTAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAGGCCAAGGACAGAATGCTAATAGAGTCCATAGGTCAGTAGGTAATGAATGTGCTGATGCAAGTTCTAGTGAGAAAGAATTTGATATGAACACGGAGGCACAATATGAGAGTGATGGTGAACCAGGTGGTGCCTGTAGACAACAAAGCGAGGCAACAGCTGATGATGGAGATGCTATGAAAGAATCCAACTTACAGACTACTGGTAGCAAAACAACTATGGTAGGAAGGTGGGGTTCAACATTTTGGAAGGACCGCCAACCAGTGTCTCAAAATGGTTCTGAATCTGGGCAGGAATCCAAAAGTGGATCAGACTATAGAAATGCAGAAGGGTCTGAAGACAATTCATTGGATGGAAGAGCAGGAAGATTAGACTCAGAAGATGATGATGGACAACAGGAGGCAGGTAAAGGTCCAAGAGGCCATTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCATTGCATTATAGTGAGATTCGTAAGCCCACTGGATCAAATTCATGGCCTCAACGGATGTCTACTACTGTTAATAGAACTGTGCATAGTAAATCTAGGATTTCAGATGATGCTGAAGATGATGATGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGATTTCGAACCTGCCACAAGTGGTCACGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGATAGTGACGAAAATATAGATGTCTCTGATGATGATGAATCTTTCTATGTTAAAAAACCTAAGGGAAAGCAACGGGGTAAGGTTGGACAAAACACAAAATCTACCAGAGATCGTAAAGCATATGCTGCATCTGGTAGACAGAGAAGAGTTAAATCTTCATTTGAAGACAATGAGTCAACAGCAGAGGATTCTGACAGTGATAGTGAGGAGGATTTCAAAAGCATGAAAAAGAGAAGTGTTCATGTCCGCAAGAATAATGGTCGCTCTTCTGTAGGCACAAATTTTTCTATGCGCAACAATGAAGTTCGCACTTCTAGTAGGTCAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAAAAGGTTCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGACTCTGAAGTTGATTGGAATGAGACGGAATTTTTGATAAAATGGAAAGGGCAGTCTCATTTGCACTGTCAATGGAAGTCTTTCGCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGTCAATCTCAAGAGAGGAGATTGAGGTCAACGATGTGAGTAAGGAGATGGATTTAGATATCATCAAACAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCCTTAAAGATAATTCTGGCAATGTCATTCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATCGATATCGCTTTTGCGCAACATGCAATTGATGAGTATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGAGATTATCAACTTGAGGGATTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAACGTTATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGTATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATTGTATATGTTGGTACCCGTGCAAGTCGAGAGGTGTGTCAACAGTATGAATTTTATAATGATAAAAGGCCTGGAAAACCAATAAAATTCAATGCGCTTTTAACCACATATGAAGTAGTTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTGAAAAATAGTGAGGCACAGTTGTATACAACCCTTTCAGAATTTAGCACCAAGAACAAGTTGCTGGTCACTGGTACTCCTCTACAGAACAGTGTTGAAGAGCTATGGGCTTTGCTTCACTTCCTTGATCCTGACAAGTTCAAGAGTAAGGATGATTTTATTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTTAGAAGAGTTATCAAGGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTCAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCATAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGTTGCAATCACCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTGGTGACAACAGTAAACTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATCCTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATCCTAGGAGAGTACATGTCACTTCGAGGATTTCAATTTCAGAGACTTGATGGCAGTACAAAAGCTGAGCTCCGACAGCAGGCAATGGATCATTTCAATGCTCCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGTGGTCTGGGTATCAACCTTGCCACAGCAGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGCCAACAAGAAGTTGTTAATATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTTGAACGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCTGAGGGTAAACTGGAGAAGAAAGAAGCAAAAAAAGGAGGAAGTTATTTTGATAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAGGAAAACAAGAAGCGACTCTTAGGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGATGCTGGTGGAGAAGAAGGACATGAGTTGTTAAGTGCATTTAAGGTTGCCAACTTTTGTAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCTGTAGTCCAAGCAGAGGAAGCTCTTGCTCCACGATCTGCAAGAAATATTAAAAGCTATGCGGAGGCGGATCCATCTGAAAGAAGTAATAAAAGGAAAAAAAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGCCGTAAAGCAGAGTATTCAGCTCCTGCTGTACCAATGATTGAGGGAGCCTCTGCCCAAGTGAGAACTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCATTGTGTGCTCATCCGCAATTAAATCACCAGGTTATGAAATATGGGAATGAGAACCAAATTGACTTAATTGTTGCTGAGGTTGGTGGTACAGTTGCGGCAGCTCCACCTGAAGCACAGACTGAGCTTTTCAATGCTCTAATTGAGGGCTGTACCGAAGCGGTGGAACTTGGGAACCTAGATCTTAAGGGGCCTTTGCTGGATTTCTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGTGTCCAAGAACTTCAACTCCTAGCAAAGCGCATCAGTCGGTATGAAGACCCCATTGCACAATTCCGTGCTTTATCATATCTCAAACCTTCAAACTGGTCGAAAGGTTGTGGATGGAATCAAGTTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAAATATTAGATTAGATGAGAGGCTTGGCCTTATGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACTGTGCTAATGCCCTTTTGGAGCAGGAACTTGCTGTTCTTGGTGTAAAAAATGCCAATAGCAGAGTTGGACGGAAGCCTTCCAAGAAAGAGAGAGAACATATGATGAACATGTCACAGTTGCGTGGGCAGGAGAAGAAAAAAAAAATGGGTTCTGTTAATGTTCCAATGAGAAAGGGTAGATTTCAGAAACCCCAAAAGGTTGAACCTATTGTAAAAGAGGAGGGTGAAATGTCTGACAATGAAGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAGTGGTGTCAAGATGTGATGGTTGATGAAATGAAAACTTTGAAACGGCTTCACAGGTTGCAGACAACTAGTGCTAATCTTCCGAAGGAAAAGGTTCTTTCAAAAATTCGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCGACATTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAAGAGCAATATGAGGCTGGGGTTGGCCCCTCTCATGTCAATGGGTCAGTATCTGTTTCATTTAGCCAGAATGGAAACCCAATCCGTCGACATATGGAGAGGCAAAGAGGGTTAAAAAATGTGACTACCTACCAAATGCCAGAACCAGTTAATAATACAGGGAACTCTGAGGCATGGAAACGAAGGAGGAGAGTGGAAAGTGATGATCATTTCCAGGGTCAGCCGCCACCTCAAAGAACTGTAAGTAATGGAATCCGGATTACTGATCCTAACTCACTCGGAATCCTTGGTGCTGGACCATCTGACAAACGCTTTGTTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAAACAAGGCTTCTCATCAGGTATAAAGTAG 5283 0.4123 MAFFRNFLNDTVSHGVMEDKGQGQNANRVHRSVGNECADASSSEKEFDMNTEAQYESDGEPGGACRQQSEATADDGDAMKESNLQTTGSKTTMVGRWGSTFWKDRQPVSQNGSESGQESKSGSDYRNAEGSEDNSLDGRAGRLDSEDDDGQQEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYSEIRKPTGSNSWPQRMSTTVNRTVHSKSRISDDAEDDDGDADYEEEDEADEDDPDDADFEPATSGHAANKDKDWEGEGSDEDDDSDENIDVSDDDESFYVKKPKGKQRGKVGQNTKSTRDRKAYAASGRQRRVKSSFEDNESTAEDSDSDSEEDFKSMKKRSVHVRKNNGRSSVGTNFSMRNNEVRTSSRSVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMSHLFDSEVDWNETEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKSISREEIEVNDVSKEMDLDIIKQNSQVERIIADRILKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQYAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDPDKFKSKDDFIQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSGDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEENKKRLLGMDIDEILERAEKVEEKDAGGEEGHELLSAFKVANFCNDEDDGSFWSRWIKPDAVVQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPEPPERVQKRRKAEYSAPAVPMIEGASAQVRTWSYGNLSKRDALRFSRALCAHPQLNHQVMKYGNENQIDLIVAEVGGTVAAAPPEAQTELFNALIEGCTEAVELGNLDLKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRALSYLKPSNWSKGCGWNQVDDARLLLGIHYHGFGNWENIRLDERLGLMKKIAPVELQHHETFLPRAPNLRDCANALLEQELAVLGVKNANSRVGRKPSKKEREHMMNMSQLRGQEKKKKMGSVNVPMRKGRFQKPQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQYEAGVGPSHVNGSVSVSFSQNGNPIRRHMERQRGLKNVTTYQMPEPVNNTGNSEAWKRRRRVESDDHFQGQPPPQRTVSNGIRITDPNSLGILGAGPSDKRFVSEKPYRTQPGGFPSKQGFSSGIK. 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1467 1497 - -
Seca8g00502 1760 CDD CD2_tandem 524 580 - -
Seca8g00502 1760 Gene3D - 399 526 - -
Seca8g00502 1760 CDD SF2_C_SNF 924 1059 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 16 415 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1202 1239 - -
Seca8g00502 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 938 1089 IPR001650 -
Seca8g00502 1760 Coils Coil 1078 1098 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 79 96 - -
Seca8g00502 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 839 IPR027417 -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 356 382 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 103 124 - -
Seca8g00502 1760 CDD CD1_tandem 411 491 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 189 213 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 383 415 - -
Seca8g00502 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 630 802 IPR014001 -
Seca8g00502 1760 SMART ultradead3 614 814 IPR014001 -
Seca8g00502 1760 Gene3D - 1355 1470 - -
Seca8g00502 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 526 590 IPR000953 -
Seca8g00502 1760 SMART DUF4208_2 1525 1630 IPR025260 -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 125 168 - -
Seca8g00502 1760 Gene3D - 528 580 - -
Seca8g00502 1760 FunFam protein CHROMATIN REMODELING 5 isoform X2 528 580 - -
Seca8g00502 1760 Pfam SNF2-related domain 637 906 IPR000330 GO:0005524|GO:0140658
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1470 1497 - -
Seca8g00502 1760 FunFam Chromo domain-containing protein 1 400 526 - -
Seca8g00502 1760 Pfam Chromo (CHRromatin Organisation MOdifier) domain 527 581 IPR023780 -
Seca8g00502 1760 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 849 1079 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1676 1760 - -
Seca8g00502 1760 Gene3D - 609 848 IPR038718 -
Seca8g00502 1760 SMART helicmild6 964 1048 IPR001650 -
Seca8g00502 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 413 501 IPR000953 -
Seca8g00502 1760 Pfam Domain of unknown function (DUF4208) 1537 1629 IPR025260 -
Seca8g00502 1760 Pfam Helicase conserved C-terminal domain 935 1048 IPR001650 -
Seca8g00502 1760 Gene3D - 849 1079 IPR027417 -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 223 246 - -
Seca8g00502 1760 SUPERFAMILY Chromo domain-like 410 493 IPR016197 -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1704 1720 - -
Seca8g00502 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 842 1123 IPR027417 -
Seca8g00502 1760 FunFam Photoperiod-independent early flowering 1 588 862 - -
Seca8g00502 1760 SUPERFAMILY Chromo domain-like 505 581 IPR016197 -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 301 329 - -
Seca8g00502 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 127 1672 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 1209 1237 - -
Seca8g00502 1760 MobiDBLite consensus disorder prediction 264 281 - -
Seca8g00502 1760 SMART chromo_7 411 494 IPR000953 -
Seca8g00502 1760 SMART chromo_7 529 583 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00502 Seca-Chr8 5803616 5825455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00502 640 1075 RAD5 or RAD16-like Gene Family AT1G02670 25.992 9.15e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g00502 SNF2_N 3.8e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00502 K11367 - gmx:100808039 3011.09