Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00498 ATGGACACTACAAGTTTCAGTTTTGTACTATTTAGCCTCCTTTTTTTGTGCCTTACTTGTACAGCTTCTGTTTCTTCACTTCCTATGTCTCTTAGAAATCAAGCTTCTATCTTGGTTTCAATCAAACAAGATTTTGAAGCTAACACTTCTTTGAAAAGCTGGGACATGTCTAATTACATGTTTCTTTGCACTTGGGATGGTATTCAATGTGACCAAAAGAATAGGTCTGTGGTGTCACTAGATATCTCCAACTTGAATGTTTCTGGGACACTTTCACCTGCCATCACAGGACTCAAGAACCTTAGATTCCTCAACATATCCAACAACATGTTCAGTGGGAATATGAGTTGGGAATTCTCAGAGTTGAAGGAGCTTCAAGTTCTTGATGCTTATAACAATGAGTTCAATTGCTCCCTCCCTCTTGGTGTCAGTGATGTACCTAAGCTCAAGTACTTGAATTTTGGCGGGAATTATTTCTCTGGAGAAATCCCTCCAAGATATGGAAACATGGTGCAGCTTAACTTTTTGTCTCTTGCAGGAAATGATTTGAGAGGTTTCATACCCTCTGAGCTTGGAAATCTCACCAACTTGACCCAGCTTTTCTTGGGATATTACAACCAATTTGATGGTGGAATCCCTCCTGATTTTGGTAAGCTGGTAAATTTAGTTCATCTTGACCTTGCAAACTGTGGTTTGAAGGGTCCAATTCCAGCTGAGTTGGGCAACCTCAACAAACTAGACACACTCTTCTTGCAAACTAATCAGCTCAGTGGTTCAATCCCTTCTCAACTAGGCAATCTCAGCAGCTTGAAATCTCTTGATATATCAAACAATGAGCTAATAGGAGACATTCCAAATGAGTTCTCAGGCCTTCATGAGCTTATCCTCTTGAACTTATTCATTAACAGGTTGCATGGAGAAATTCCCACTTTCATTGCTGAGCTACCTAAGTTGGAAGTGTTGAAGCTTTGGCATAACAACTTCACAGGAGCTATTCCTTCAAAGCTTGGCCAGAATGGTAAATTGACTGAGCTTGACTTGTCAACAAATAAGCTCACTGGATTAGTGCCAAAATCTCTATGCCTTGGAAAGAGGCTAAAGATTTTGATCTTGCTCAATAACTTTCTCTTTGGATCTTTGCCTGATGAACTTGGTCAATGCTACACACTCCAAAGAGTTCGTTTGGGACAGAACTATTTGACAGGGTCAATACCAAATGGATTTCTTTATTTGCCTGAGCTTTCCCTTCTTGAACTACAGAACAATTATCTTAGTGGCTGGCTTCCACATGAAACAAGCACTGTACCCTCTAAGCTTGGACAGTTGAATCTAGCAAATAATCGATTATCAGGCTCTCTGCCAACCACTATTGGAAACTTTCCCAACTTGCAAATTCTGCTGCTTTATGGAAATAGATTCTCAGGAGAAATCCCTCCAGATATTGGGAGGTTGAAAAGCATTCTCAAGTTGGATATGAGTGTTAACAATTTTTCAGGCAGTATTCCTCCTGAGATAGGTAATTGTTCCTTCCTCACCTATTTAGATTTAAGCCAGAACCAGTTATCAGGTCCTATCCCAGTTCAGGTTTCTCAAATTCACATACTAAACTATCTTAATGTCTCATGGAACAACCTAAACCAAAGTCTTCCCAAGGAACTTGGGGCCATAAAGGGCTTAACTTCAGCAGATTTCTCTCATAATAACTTCTCTGGTTCAATTCCTGAGGTGGGACAATTCTCAGTCTTTAATTCTACATCTTTTGTGGGAAATCCTCAGCTCTGTGGATATGACTTGAATCCATGCAACCATTCTTCAACAACAATATTGGAGTCTCAGGACACAGGAAATTCAAAACCTGGAGTTCTTGGGAAGTATAAGCTTCTTTTTGCATTGGCACTGTTAGCTTGTTCATTGGTGTTTACAACCTTAGCCATTGTCAAGAGCAGAAAGGGAAGGAGGCACTCCAATTCATGGAAGCTCACAGCATTTCAGAAGCTGGCATATGGAAGTGAAGACATTGTAGGATGTATAAAGGAAAGCAATATCATAGGAAGGGGAGGAGCTGGGGTTGTTTATGGAGGATCAATGCCAAATGGAGAGCAAGTAGCTGTGAAGAAGCTGTTGGGAATAAACAAAGGTTGTTCTCATGATAATGGTTTCTCTGCAGAAATAAGGACACTAGGTAGGATCAGGCACAGGTACATTGTAAGGTTGCTAGCATTTTGTACAAATAGAGAGACTAATTTACTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGTGAAGTCTTGCATGGGAAAAGGGGAGAGTTTCTTCAGTGGGATACTAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGACTTTGCTATTTGCACCATGATTGTTCCCCTCTGATAATCCATAGAGATGTTAAGTCAAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCTTGCAAGATACAGGCACATCAGAGTGCATGTCATCCATTGCTGGTTCTTATGGCTACATAGCTCCAGAGTATGCATACACATTGAGAGTTGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTATTAACAGGGAGAAGGCCAGTGGGGGATTTTGGGGAAGAAGGGATAGATATTGTTCAATGGACAAAGCTGCAAACAAATTGGAGCAAAGAGAAAGTAGTGAAGATCCTTGATGGGAGGCTAAGTCACATTCCTTTAGATGAAGCAGAACAGTTATTCTTTGTGGCCATGTTATGTGTTCAGGAACAAAGTGTGGAGAGACCAACCATGAGAGAAGTGGTTGAAATGCTGGCACAAGCAAAACAACCAAATACATTTCAAGTGAAGTAA 2886 0.4051 MDTTSFSFVLFSLLFLCLTCTASVSSLPMSLRNQASILVSIKQDFEANTSLKSWDMSNYMFLCTWDGIQCDQKNRSVVSLDISNLNVSGTLSPAITGLKNLRFLNISNNMFSGNMSWEFSELKELQVLDAYNNEFNCSLPLGVSDVPKLKYLNFGGNYFSGEIPPRYGNMVQLNFLSLAGNDLRGFIPSELGNLTNLTQLFLGYYNQFDGGIPPDFGKLVNLVHLDLANCGLKGPIPAELGNLNKLDTLFLQTNQLSGSIPSQLGNLSSLKSLDISNNELIGDIPNEFSGLHELILLNLFINRLHGEIPTFIAELPKLEVLKLWHNNFTGAIPSKLGQNGKLTELDLSTNKLTGLVPKSLCLGKRLKILILLNNFLFGSLPDELGQCYTLQRVRLGQNYLTGSIPNGFLYLPELSLLELQNNYLSGWLPHETSTVPSKLGQLNLANNRLSGSLPTTIGNFPNLQILLLYGNRFSGEIPPDIGRLKSILKLDMSVNNFSGSIPPEIGNCSFLTYLDLSQNQLSGPIPVQVSQIHILNYLNVSWNNLNQSLPKELGAIKGLTSADFSHNNFSGSIPEVGQFSVFNSTSFVGNPQLCGYDLNPCNHSSTTILESQDTGNSKPGVLGKYKLLFALALLACSLVFTTLAIVKSRKGRRHSNSWKLTAFQKLAYGSEDIVGCIKESNIIGRGGAGVVYGGSMPNGEQVAVKKLLGINKGCSHDNGFSAEIRTLGRIRHRYIVRLLAFCTNRETNLLVYEYMPNGSLGEVLHGKRGEFLQWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGIDIVQWTKLQTNWSKEKVVKILDGRLSHIPLDEAEQLFFVAMLCVQEQSVERPTMREVVEMLAQAKQPNTFQVK. 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00498 961 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 319 605 - -
Seca8g00498 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
Seca8g00498 961 SUPERFAMILY L domain-like 283 609 - -
Seca8g00498 961 Gene3D Ribonuclease Inhibitor 205 264 IPR032675 -
Seca8g00498 961 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 172 951 - -
Seca8g00498 961 SMART LRR_typ_2 98 121 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 170 194 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 411 442 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 219 243 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 267 290 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 315 339 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 460 484 IPR003591 -
Seca8g00498 961 SMART LRR_typ_2 340 362 IPR003591 -
Seca8g00498 961 SMART serkin_6 677 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00498 961 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 207 312 - -
Seca8g00498 961 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 646 754 - -
Seca8g00498 961 Gene3D Ribonuclease Inhibitor 265 338 IPR032675 -
Seca8g00498 961 ProSiteProfiles Protein kinase domain profile. 677 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00498 961 Pfam Protein tyrosine and serine/threonine kinase 679 949 IPR001245 GO:0004672|GO:0006468
Seca8g00498 961 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca8g00498 961 SUPERFAMILY L domain-like 42 357 - -
Seca8g00498 961 SUPERFAMILY Protein kinase-like (PK-like) 671 949 IPR011009 -
Seca8g00498 961 Gene3D Phosphorylase Kinase; domain 1 654 754 - -
Seca8g00498 961 Gene3D Transferase(Phosphotransferase) domain 1 755 960 - -
Seca8g00498 961 ProSiteProfiles Leucine-rich repeat profile. 341 362 IPR001611 GO:0005515
Seca8g00498 961 Gene3D Ribonuclease Inhibitor 30 204 IPR032675 -
Seca8g00498 961 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 755 961 - -
Seca8g00498 961 Pfam Leucine Rich Repeat 269 291 IPR001611 GO:0005515
Seca8g00498 961 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 119 206 - -
Seca8g00498 961 Gene3D Ribonuclease Inhibitor 339 605 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00498 Seca-Chr8 5765908 5769926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00498 46 951 Receptor kinase-like Gene Family AT5G65700 57.878 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g00498 PK_Tyr_Ser-Thr 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00498 - - gmx:100816158 1633.62