LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g00497	ATGATCACTACAGTCCTCAGAAGAGCTTGTTCCGCGCTCTCAAGGCGCGGCATCCCTGCCGCCTTCATCGCCGCCGCTGACCCCCCTCTCACCTCCACCGCCCGGAGCGAGCTCCGGCGACTCTCCGTCTTCACATCGAGGCCCTTCCATACGAAACCGGGACCCTTGCATTTCCGCGCCTCCTTGCCTTCTCTTGCGGAGTATGCTGTCGAAGATTTCCCATACGAAGAAGGGTCCAAAGGGAACAACAACGACGAAGGCCTCGAGATCGCGAAACTTGGGATTTCTCAGGATATTGTCTCTGCGTTGGCCAAAAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGGGCCAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCTATCATTGATAAGATTATTCAGTTTAATGCTAAGCATGGACGAGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACTAGAGAACTTGCGCGGCAGGTTGAAAAGGAGTTCCAAGAGGCAGCACCTAACTTGGACACAATTTGTGTTTATGGGGGTACACCCATTTCTCGACAAATGAGGCAGCTTGATTATGGGGTTGATATTGCAGTGGGCACGCCGGGTCGAATTATTGACCTTCTCAATAGAGGTTCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTCGACGAAGCCGATCAGATGCTTCAAGTAGGCTTTCAGGAAGATGTGGAGAAAATCTTGGAGAGATTACCCCCAAATCGACAGACTCTTATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTACACGCAACTATCTAAAAAATCCCCTAACTATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTATACTCAATTGCATCTGATATGTATGTTAAACAGGGAATTCTGGCACCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATACCATGGCAAAAAGTCTTCAATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAGAGAACACTTGCTGGCTTCAGAGATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCATCGATCAGGACGAACAGGTCGTGCTGGTAAAAAAGGATCTGCTATTCTTATTTATAGTGAAGACCAATCCAGAGCTGTTAGGACTATCGAGCGTGATGTAGGCTGTAGATTTAAAGAGCTACCAAGGATTGCTGTCGATAGTGCATCAGTGGACACATTTGGTGGCATGGGTGGTGGGCGATTTGGTTCTTACGGAGGAGGTACAAGGGACCGCCGATATGGTGACACAGGCTTTGGCCGTGGTCCTGGATTTGGGCGTTCTGGGGGTTATGGTAACTCTGGATCTGGCCGCTCTAGCTTTGGAAATTCTGGTGAACCAAATTATAATCGTTTTGGTGGCTCTGGTTTTAGTCAATCAGGAGGGGGATTTTCTCGTAATTCATCTGGTGAAATGAATAGATTTGGTGGACCAAGCTCTGGTCGTTTTGGCTCCTTTGGTGGTGCCTCTGGTTCAGGTCAATCAGGAAGTAGATCTGGTGGATCATCCAGTGGATTTAGATTTAGTCGACCAGGTGGGGGATTTGGGGGTTCAGATCACTCTGGTGGTTTTGGAGATTTTGGCTCAGGTCGATCTAGTGCATTTGGTGATTCTCGGGACAGTGATCAGAACAACAGAAGATAA	1875	0.4667	MITTVLRRACSALSRRGIPAAFIAAADPPLTSTARSELRRLSVFTSRPFHTKPGPLHFRASLPSLAEYAVEDFPYEEGSKGNNNDEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIIDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFQEAAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGSLNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPNRQTLMFSATMPSWIKQITRNYLKNPLTIDLVGDSDQKLADGISLYSIASDMYVKQGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSLQCEALHGDISQAQRERTLAGFRDGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILIYSEDQSRAVRTIERDVGCRFKELPRIAVDSASVDTFGGMGGGRFGSYGGGTRDRRYGDTGFGRGPGFGRSGGYGNSGSGRSSFGNSGEPNYNRFGGSGFSQSGGGFSRNSSGEMNRFGGPSSGRFGSFGGASGSGQSGSRSGGSSSGFRFSRPGGGFGGSDHSGGFGDFGSGRSSAFGDSRDSDQNNRR.	625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g00497	624	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	88	116	IPR014014	GO:0003724
	Seca8g00497	624	CDD	DEADc	99	294	-	-
	Seca8g00497	624	FunFam	ATP-dependent RNA helicase RhlE	79	296	-	-
	Seca8g00497	624	SMART	helicmild6	347	427	IPR001650	-
	Seca8g00497	624	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	162	448	IPR027417	-
	Seca8g00497	624	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	322	466	IPR001650	-
	Seca8g00497	624	Pfam	Helicase conserved C-terminal domain	323	427	IPR001650	-
	Seca8g00497	624	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	84	467	-	-
	Seca8g00497	624	MobiDBLite	consensus disorder prediction	509	552	-	-
	Seca8g00497	624	MobiDBLite	consensus disorder prediction	482	624	-	-
	Seca8g00497	624	FunFam	Nucleolar RNA helicase II	315	471	-	-
	Seca8g00497	624	Gene3D	-	89	297	IPR027417	-
	Seca8g00497	624	MobiDBLite	consensus disorder prediction	562	583	-	-
	Seca8g00497	624	Gene3D	-	310	468	IPR027417	-
	Seca8g00497	624	SMART	ultradead3	107	310	IPR014001	-
	Seca8g00497	624	Pfam	DEAD/DEAH box helicase	112	281	IPR011545	GO:0003676\|GO:0005524
	Seca8g00497	624	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	119	293	IPR014001	-
	Seca8g00497	624	CDD	SF2_C_DEAD	319	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g00497	Seca-Chr8	5737387	5741900	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g00497	93	459	Eukaryotic Initiation Factors Gene Family	AT3G19760	33.514	3.78e-69	228

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g00497	-		-	gmx:100786041	806.208