Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00491 ATGTTAGCTTGTGATTGTGTAGGTGAGAAAAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCACCTCTCGGAAGTCGTGTAGTGTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCACAGCTTATTTGTCAACTTCACAATGTGACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTCTACCTGCTGCCTGCTGAATTGGGTACTCCTAGCAAACAACCAACCAATTACTTCTGTAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGCAGAGCAGCTGAAAAAGTTTTCCCTCCTCTTGATTACTCACAACAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTGACTACAGGATGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCCTGGGCATTCGACGAGCAAATCGTCCACAGACTATCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCCGAATTTGTCATTCCTTTGGCCAAGTATGTCAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTCCGTCGATACATGGGTACTATAACAGGTATTAGTGATTTAGATCCAGTCCGCTGGCCAAACTCACATTGGCGTTCTGTAAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTCTGACCACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGGCCTTGGCCATCGGGACTACCTTCTCTATATGGTCTCAAGGATGGTGACATGAGCATTGGTTCTCCATTTATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAGTCTTTGAACTTCCAGGGGCTTGGTGTTACGCCATGGATGCAACCAAGGCTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACCTCTGCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCTCTACTCATACTTCCGAGATACAGAGGCAAATATTACCACAGTCTCAGCCCCAAAACACCCTTCTAAACAATTTTCAAGAAAACCAGGCACCTGCTCAGCCACAGCTTCTGCAACAACAGCAACAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAGCAGCAGCAACAGCAACAAGTTAAAAACATGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTGGCATCAGGTACACATTCTCAATCTCCACCAATGCAAGCCCTAGCTTCACAATCACACTGCCAGCAGCAGAGCTTTCCTGATCCTATCAGGAATCATATTTCCAGCTCTGATGTTTCCACCATCCAGAGTCTACTAGGTTCGTTTTCTCAGGATGGAACATCTCAGTTACTTAATTTGAATGGATCCAATTCCATTATATCTTCTGCGGCCATACTTCCCAAGCAAATAACTGTTGAACCTCAGCTTCCATCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTAGAAAACATCGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCAAGGAGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGCCGAATATGAGAAATATAGGCACTGTGAATGATTCATTGTCATTGCCATTTTCTGCTTCAAACTGTGGTGGTGCTACGGGCACTGATTTTCCACTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTTTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAACTCGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCCAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGATGTTCTTCTTCTTGGCGATGATCCTTGGCAGGAGTTTGTGAACAACGTGGGGTATATCAAAATACTGTCTCCTCAAGAAGTGCAACAAATGGGCAAAAGTGTTAGTACTTCTACTTCAGCCTCAGGCCACAAACTTTCTACTGCTGGCAACTCTTGTGATAATTATGTGAGTCGACAAGAGTTGAGAAGTTCGAGAAATGGCATGGCATCAATGGGATCTTTTCACTACTAG 2688 0.449 MLACDCVGEKKCLNSELWHACAGPLVSLPPLGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMSIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMTSAAFQEMRTMDPSKSSSQSLLQFQQTSNVPSTHTSEIQRQILPQSQPQNTLLNNFQENQAPAQPQLLQQQQQLHRYHPYSDQRQQQQQQQQVKNMPVQQQLPNVISPLSNLASGTHSQSPPMQALASQSHCQQQSFPDPIRNHISSSDVSTIQSLLGSFSQDGTSQLLNLNGSNSIISSAAILPKQITVEPQLPSAAAQCVLPQVENIGTSQSNVSELAALPPFPGREHSAYQGAADPQSNLLFGINIDPSSLMLQNGMPNMRNIGTVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPQEVQQMGKSVSTSTSASGHKLSTAGNSCDNYVSRQELRSSRNGMASMGSFHY. 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00491 895 Pfam Auxin response factor 247 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca8g00491 895 Gene3D - 285 357 - -
Seca8g00491 895 SUPERFAMILY DNA-binding pseudobarrel domain 106 250 IPR015300 -
Seca8g00491 895 Gene3D - 755 850 - -
Seca8g00491 895 FunFam Auxin response factor 285 357 - -
Seca8g00491 895 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Seca8g00491 895 SMART B3_2 121 223 IPR003340 GO:0003677
Seca8g00491 895 CDD B3_DNA 120 221 IPR003340 GO:0003677
Seca8g00491 895 MobiDBLite consensus disorder prediction 446 475 - -
Seca8g00491 895 ProSiteProfiles PB1 domain profile. 759 845 IPR000270 GO:0005515
Seca8g00491 895 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Seca8g00491 895 MobiDBLite consensus disorder prediction 502 533 - -
Seca8g00491 895 MobiDBLite consensus disorder prediction 545 568 - -
Seca8g00491 895 SUPERFAMILY CAD & PB1 domains 752 835 - -
Seca8g00491 895 FunFam Auxin response factor 119 223 - -
Seca8g00491 895 MobiDBLite consensus disorder prediction 851 870 - -
Seca8g00491 895 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 851 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g00491 895 Gene3D - 119 222 IPR015300 -
Seca8g00491 895 Pfam AUX/IAA family 748 846 IPR033389 -
Seca8g00491 895 FunFam Auxin response factor 754 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00491 Seca-Chr8 5662460 5677003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00491 5 479 B3 DNA Binding Superfamily AT1G30330 83.682 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca8g00491 AUX_IAA 5.5e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00491 - - gmx:100809105 1604.34