Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00479 ATGAACAACAATATTCCAGGTTGGAATTTTGAGAGTGATACAAGTGTCATCAATCAAAAGAAACCCAAAGGGATGGACAGAGAACTTGTAGAGCTTCTATGGCAAAATGGGCAGGTAGTTATGCACAGCCAAACACATAGGAAACCAGTTGGGAATTCATCTGACTTGAGACAGGTTCAGAAAACTGATAGATCAACATTAAGGACTAGTGGGCCATATGGGAATTCAAGTGAGTTAAGTCAAGAAGATGTGACAGTACCATGGATCCAATACCCACTTGAGAATCAATTGGATCAGGAATTGTGTTCAAACCTTTTATCTCAACTAGCACCTTGTGAAGTTCAATCTTACAAGCCAATCAAGCAATTAGAAGAGGGAAAGGTTCCCAAACCTGTTGCCTCTAGTTCTCCCCATGCAACTTCAAGTTCACAATCACCTAATATGAGACCCTCATGTGTTCAGGAATTCCAAGGAAATCCCATGCCTGCTCCAAGATTTCATGTTCCTGTTCCATCTCAGAAAATCAATAGTTTTGGTGGATCACAAAAGGTCCTAAATTTTTCTCACTTTTCAGCACCCCAGAATGCTTCTTCAGCATCTGCTAGTGCACAGTTTAGAGAGAAAGTTACTTCTAATTTGTCACAAAGTGAGGCCAGAGAGGGTTCAGTGATGACAGTTGGTTCAAGTCACTGTGGAAGCAATCAAATCCCTCAGGATCCAGATTTAAGCAGGGCATCAAGCAATGGTGTTTGGGCTAATACCTTATCAGATGAGCCTAAAGGTATAAGAGATTGTGTCCAGAGAACAATTCCTCAGAGTGATAAAGGAAAATCAGAGATGATTGAACCAACTGTGACATCATCTTCTGGTGGCTCAGGCAGTAGTATTGGAAGAACTTGTTCTCTATCAACAAGAAGTCATGGCCAAAAGAGAAAAGCAACAGATGCAGAAGCATCAGAGGAACAAAGTGAGGCTACAGAACTTAAATCAGGTGATGGAAACAAGGCATCTCAGAGGACAGGGTCTTCCAGAAGGAACCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGACGAAGAGATAGGATCAATGCAAAGATGAGAGCATTGCAGCAACTGATACCTAACTGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATAGAATACTTGAAATCACTTCAGTTACAGCTCCAGGTGATGTGGATGGGGGCTGGCATGACACCTCTTATGTTTCCAGGAATTCAGCAATATATGTCACAAATGAGTATGGGAATGGCTCCACCTTCAATTCACAATCCTATGCAATTACCAAGAGCCCCACATGATCAATCCATACCAAACCAGGCCTTAATGTGCCAAAATCCAGTTTTGGGTGCTTTTAATTACCAAAATCAGATGCAAAACCCATGTCTTTCAGAGCAATATGCACGTTACATGGGTTATCAACTTATGCAAAGTGCCTCTCAGCCAATGAATGTATTTAGATATGGTTCCCAGCAAGGGCAAAATAGTCAAACAATGATTACACCCAGCAATAACAGTGGACCCATGTGTGGAGCAGATAATATTGACGATGCTGTGAGAAGCAAAATGGGTTCTTCCACCTTTAACTGA 1623 0.4165 MNNNIPGWNFESDTSVINQKKPKGMDRELVELLWQNGQVVMHSQTHRKPVGNSSDLRQVQKTDRSTLRTSGPYGNSSELSQEDVTVPWIQYPLENQLDQELCSNLLSQLAPCEVQSYKPIKQLEEGKVPKPVASSSPHATSSSQSPNMRPSCVQEFQGNPMPAPRFHVPVPSQKINSFGGSQKVLNFSHFSAPQNASSASASAQFREKVTSNLSQSEAREGSVMTVGSSHCGSNQIPQDPDLSRASSNGVWANTLSDEPKGIRDCVQRTIPQSDKGKSEMIEPTVTSSSGGSGSSIGRTCSLSTRSHGQKRKATDAEASEEQSEATELKSGDGNKASQRTGSSRRNRAAEVHNLSERRRRDRINAKMRALQQLIPNCNKTDKASMLEEAIEYLKSLQLQLQVMWMGAGMTPLMFPGIQQYMSQMSMGMAPPSIHNPMQLPRAPHDQSIPNQALMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYQLMQSASQPMNVFRYGSQQGQNSQTMITPSNNSGPMCGADNIDDAVRSKMGSSTFN. 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00479 540 MobiDBLite consensus disorder prediction 329 344 - -
Seca8g00479 540 MobiDBLite consensus disorder prediction 345 360 - -
Seca8g00479 540 MobiDBLite consensus disorder prediction 125 165 - -
Seca8g00479 540 FunFam Basic helix-loop-helix transcription factor 342 405 - -
Seca8g00479 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Seca8g00479 540 MobiDBLite consensus disorder prediction 225 360 - -
Seca8g00479 540 MobiDBLite consensus disorder prediction 225 254 - -
Seca8g00479 540 MobiDBLite consensus disorder prediction 134 154 - -
Seca8g00479 540 Gene3D - 342 403 IPR036638 GO:0046983
Seca8g00479 540 SMART finulus 353 402 IPR011598 GO:0046983
Seca8g00479 540 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Seca8g00479 540 MobiDBLite consensus disorder prediction 42 79 - -
Seca8g00479 540 CDD bHLH_AtPIF_like 347 410 IPR047265 -
Seca8g00479 540 MobiDBLite consensus disorder prediction 308 328 - -
Seca8g00479 540 PANTHER TRANSCRIPTION FACTOR PIF3 20 508 IPR044273 GO:0003700|GO:0006355
Seca8g00479 540 MobiDBLite consensus disorder prediction 271 307 - -
Seca8g00479 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 410 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00479 Seca-Chr8 5570556 5573864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00479 1 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 34.579 7.34e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g00479 HLH 3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00479 K16189 - gmx:100811777 762.681