Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00469 ATGGAAAGTTATAGTAATTGTGAGAGAAGGCAGTACAAGAAATCAGCAGTTCCACGCCTGCGGTGGACACCTCAACTCCATCAACAATTTCTTCAAGCTGTTCAAACTCTTGGTGGAAAACAAAAGGCAACTCCAAAGCGAATTTTGCAGCAGATGAGTGTGAAAGGATTGAGAATCGCTCACATCAAAAGCCATCTTCAGATGTACAGAAACACGAAAGGACGTCATGCCATTCTCGCACCAGTTGTAGATCAGTTGCTGCAAGGAATTCCAAACGATCCCAACATCTGTTCTATTTTTTGCTCAACCCAAAGATCTATGGGAAGTACTTTAAGAGTATCAAAATATGAAAAAAGAATTGTCGATCACGAACTTCATCTGTTAGACAACAAGAAATTAGGGCTTTTACAAACCAGCGAGGAAACTACTGATTATGATCTAAACCAGGAACCAAAGTCAAGCTCAAGCGCACGCTTGCTTAGTGATGATGTGTCAAATGAAGAAGAAAATTACAAGATGATTAAATTTCGAGATCTCTCATTCTCTTTTAATAGTACGCCTCTGATTTCAATGATGCGTAGTGAGAATGGCCAACAAAATTTGTGTTTTTCGTCATCAATTGCAGCTGGTGGTAATCATTCCGTTGATTATAGTTCAAGTTCTACACCGTCTTTTGGAAAAAATTATATCAACTTAGACCTAACAATCTGA 711 0.3868 MESYSNCERRQYKKSAVPRLRWTPQLHQQFLQAVQTLGGKQKATPKRILQQMSVKGLRIAHIKSHLQMYRNTKGRHAILAPVVDQLLQGIPNDPNICSIFCSTQRSMGSTLRVSKYEKRIVDHELHLLDNKKLGLLQTSEETTDYDLNQEPKSSSSARLLSDDVSNEEENYKMIKFRDLSFSFNSTPLISMMRSENGQQNLCFSSSIAAGGNHSVDYSSSSTPSFGKNYINLDLTI. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00469 236 FunFam Two-component response regulator 11 76 - -
Seca8g00469 236 SUPERFAMILY Homeodomain-like 18 71 IPR009057 -
Seca8g00469 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 141 IPR046955 GO:0003700
Seca8g00469 236 Gene3D - 17 74 - -
Seca8g00469 236 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Seca8g00469 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 74 IPR017930 -
Seca8g00469 236 Pfam Myb-like DNA-binding domain 20 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00469 Seca-Chr8 5481140 5486302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00469 10 73 G2-like Transcription Factor Family AT2G42660 64.062 7.58e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca8g00469 Myb_DNA-binding 5.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00469 - - gmx:102661690 240.736