Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00465 ATGGATAATACAAACGAAGCATCATCATCCTTGAGTTTTGTATCATCTCACTTGTCAAATGGTTCTTGTAATCACCACATATCTTCCTCCACCAGCAATGACCATGGGGCAAATATTGAAATTTTGAGTCTGAATAAGCTCAGTGGAAGCCTTGAGAAGTTATTGATTGATGCTGAGTTTGATTATAGTGATGCTGAGATTCTTGTGGAAGACATCCCTGTGGGTGTTCATCGCTGTATATTGGCTTCACGCAGTCAGTTTTTTCATAAGCATTTTAAGAAAGGAAATGATGGATCAGTGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCGTAATGGAACAGTTGGATATGAAGCTTTCCTTGTTTTCTTGCATTATTTGTATACTGGAAAGCTAAAGGCTTCACCACCAGAAGTGACAAAATGTGTTGATGAAGCATGTGTCCATGATGCATGCCGCCCTGCCATCAATTATGCTTTGGAGCTGATATATGCTTCTACCACTTTTGAGATGAAAGAGCTTGTTTTACTTTTCCAGAGGCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATGGCAGCCTACCACTGCAAACTAAACCAGCTTCGCTCTCAGTGCATCCAGAGAGTAGCAAGGTCTGACCTTGACAACATATCATTGGAAAGAGAACTCCCTCATGAAGTTGTGATTGAAATCAAATCACTCCGAGTCCAATCTCTTCCAGGATCCACACCTGATGCAATGGAAGTGGAACCAGAACCTTTGAATGATAAGAGTATCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTTGAGTTACTGAAGCTTCTTTTGAATGAATCCAGTGTCACTCTAAATGATGCCTATGCCTTGCACTATGCATGTGCCTATAGTGATTATAAGGTTGTTCAAGAAGTTCTTAATCTTGGTTTGGCTGATATTCTCCTTAGAAATCCCCGAGGATACACAGTTCTTCATGTAGCTGCAAGACGAAAGGATCCATCCATTTTGGTAGCACTACTGAAGAAAGGGGCTAGTGCATCAGAAACCACTCCAGATGGACAAACTGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGACAAAACCGTGCAAGGGAAGGAATCTAACAAGGACACGCTCTGTGTTGATGTCCTAGAGAGAGAGATGAGAAGAAATTCTATGTCTGTGAATATGTCTGTTTTGTCACAGTTATCTGCTGATGACTTGCATATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGCTTTTGTTTCCTGCTGAGGCTAGGGTAGCCATAGAGAATGCTGAGGCAGATTCATCAGCGCTGTATACAAGTTCATTAGCTTTGAGGAGCTCAAGTGGCAATCTAAAAGAAGTTGATCTAAATGAAACTCCCTCTGTTCGAACCAGAAAACTCCAGTTAAGATTGCATGCCCTTGTAAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGCTCTGAGGTGCTTGACAAGTTTCTAGAAGATGATATGCCTGATGTTTTCTTCCTAGAGAAGGGCTCTGAACAAGAGCAGAGAATCAAGAAAACACGTTTCATGGAACTTAAGGATGAGGTGCAAAAAGCATTTCACAAGGATATGGCTGAAAATAACCATTCAGGTTTCTCATCTTCGGTCTCTTCCTCATCATCCTCAACTCATAAGGATGGTCTTAACCGCAGAGCTAGGAAAAAATAA 1776 0.4105 MDNTNEASSSLSFVSSHLSNGSCNHHISSSTSNDHGANIEILSLNKLSGSLEKLLIDAEFDYSDAEILVEDIPVGVHRCILASRSQFFHKHFKKGNDGSVKEGKPRYLMSDLVRNGTVGYEAFLVFLHYLYTGKLKASPPEVTKCVDEACVHDACRPAINYALELIYASTTFEMKELVLLFQRHLLNFVEKALVEDVIPILMAAYHCKLNQLRSQCIQRVARSDLDNISLERELPHEVVIEIKSLRVQSLPGSTPDAMEVEPEPLNDKSIRKILKALDSDDVELLKLLLNESSVTLNDAYALHYACAYSDYKVVQEVLNLGLADILLRNPRGYTVLHVAARRKDPSILVALLKKGASASETTPDGQTALSICQRLTRRKDYHDKTVQGKESNKDTLCVDVLEREMRRNSMSVNMSVLSQLSADDLHMRLDYLENRVAFARLLFPAEARVAIENAEADSSALYTSSLALRSSSGNLKEVDLNETPSVRTRKLQLRLHALVKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEQEQRIKKTRFMELKDEVQKAFHKDMAENNHSGFSSSVSSSSSSTHKDGLNRRARKK. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00465 591 Gene3D - 266 465 IPR036770 -
Seca8g00465 591 Pfam NPR1/NIM1 like defence protein C terminal 373 575 IPR021094 -
Seca8g00465 591 Gene3D Potassium Channel Kv1.1; Chain A 32 221 IPR011333 -
Seca8g00465 591 MobiDBLite consensus disorder prediction 563 581 - -
Seca8g00465 591 Pfam Domain of unknown function (DUF3420) 224 274 IPR024228 -
Seca8g00465 591 ProSiteProfiles Ankyrin repeat region circular profile. 331 359 - -
Seca8g00465 591 SMART BTB_4 63 189 IPR000210 GO:0005515
Seca8g00465 591 Pfam Ankyrin repeats (3 copies) 279 359 IPR002110 GO:0005515
Seca8g00465 591 MobiDBLite consensus disorder prediction 558 591 - -
Seca8g00465 591 SUPERFAMILY POZ domain 61 187 IPR011333 -
Seca8g00465 591 CDD BTB_POZ_NPR_plant 45 189 - -
Seca8g00465 591 ProSiteProfiles Ankyrin repeat profile. 331 363 IPR002110 GO:0005515
Seca8g00465 591 FunFam Regulatory protein NPR3 37 221 - -
Seca8g00465 591 Pfam BTB/POZ domain 61 143 IPR000210 GO:0005515
Seca8g00465 591 PANTHER REGULATORY PROTEIN NPR3 25 582 IPR044292 GO:0009862|GO:2000022|GO:2000031
Seca8g00465 591 SMART ANK_2a 331 360 IPR002110 GO:0005515
Seca8g00465 591 SMART ANK_2a 297 327 IPR002110 GO:0005515
Seca8g00465 591 SUPERFAMILY Ankyrin repeat 274 374 IPR036770 -
Seca8g00465 591 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Seca8g00465 591 FunFam regulatory protein NPR3-like 265 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00465 Seca-Chr8 5445733 5450357 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca8g00465 NPR1_like_C 2.2e-84 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00465 K14508 - gmx:100814739 938.332