Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00460 ATGGCAAGATATGGAGAAGAATCCCATAGTTTCTCCTATGATGTTTTCATCAGTTTCAGAGGAGAAGACACAAGGCACAAATTTATAGGACATCTTCGTAAAGAGTTGTGTCGGAAGGGAATCAACACTTTCATAGATGATAAGAATCTGAGGATAGGGGAAGGTATTTCACCTGCTCTTTCCAAAGCCATAGAAGAATCAAAGATTTCAATTATTGTGTTTTCTGAGAATTATGCATCTTTCACTTGGTGTCTTGATGAACTTGTGAAGATACTAGATTGTACTAAGAGGAGTGGCAACAAAAATCAAGTTGCTTTCCCAGTTTTTTATCATGTAGATCCATCACATGTACGGCATCAGAAAGAGAGTTACCACAAAGCAATGATTGCACACGAGAATAGATTCGGCAAAAGTTCAGAAAAAGTGTGTAGATGGAGATCAGCTTTGTTTGAAATAGCCAACTTAAAAGGCCAGCATATTAGTACTGGGTATGAAATTGATTCTATTGAAGAGATTGTTGAGCAGGTCTATGCTAACATAGCTCCTAAACCTTTAGGTGTTGGTCAAAACCCAGTTGGACTTGAGCACCGCATAGAAGAAGTGAAGTCACTTCTAGACATGGAGCTTACAGATGACACAGTATGCATGTTAGGGATATATGGACTTGGTGGAATAGGGAAAACAGAACTTGCCAAAGCTTTGTATAACAAGATTGTACACCAATTTGAAGCTGCAAGTTTTCTTGCCAATGTCAGAGAAAAATCAAACAAAATCAATGGCATGGAAGATCTACAAAAGACACTTCTATCAGAAATGTTGGAGGAGTTAGAAACTGAGTTGGGCAGTCCAAGTAAAGGAATCTATGAAATCAAACGCAAGCTTGGCAAGAAAAAAGTACTTTTGGTTCTTGATGATGTTGATGATAGAGAACAGTTAAAGAATCTAGCAGGAAGGTGTGATTGGTTTGGTTTAGGTAGCAGGATCATTATAACAACAAGGGACAGAAAATTGCTTCTTGGTCATCAAGTTGAAAAGATTTATAAAATGACAGAACTTAATGATCAACATTCTCTTGAGCTATTTTGTCAGAATGCCTTTGGAAAGAGTCATCCTGAAACAGGCTATGAAGATATGTCATCTCTTGCAGTAGGTTATGCCAAGGGTCTTCCATTGGCTTTAATAGTAATAGGCTCCAATTTGGCTACTGAAAGAAGTTTAGAGGATTGGGAACTTTTATTGAAAAAATATGAGAGGATTCCAGATTCAAAGATTCAACATGTGCTCAAAATAAGCTACAATAGTTTGGGGGATGATGATGCCAAGAGTATTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGAATAGAATATGTTGAAAAAATACTTGAGGAATTTGATGCAACATCTAATATTAAAGTTCTTGTTAATAAATCTCTCGTAAATGTTGAACATGGTTGCTTGGAGATGCATGACTTAATACAAGATATGGGTAGAGAGATTGTTAGGCAGGAGTCAAGAATTCCCAGCAAACGTAGCAGATTATGGTCACATAAAGATGTTCTGAAAGTATTAACTGAAGATTCTGGAACCGATGCAATTGAAGGGATAATTCTTGATCCCCCACAACGAGAAGAAGTAGATTGGAGTGGTACTGCCTTTGAGGAGATGAAATGGCTCAGGATTCTCATTGTTCGAAATACATCATTTTCAACATGGCCTAAATATTTACCAAATCATTTAAGATTGCTTGATTGGGAAGAGTACCCTTCAAAGTCATTCCCATCAAAATTTCATCCAAAAGAAATTGTTGTCTTCAATTTGTGCAAAAGTCGTCTTACTCTAGAAGAGCCATTTAAGAAATTTTCATGTTTGATTAACATGGATTTGTCACATAATGAGTTTATCACTACAATGCCTGATGTGTCAGCAGTTCAAAATTTGCGAGAGTTGAGACTTGATAAATGTAAGAATCTAATTGAAGTTCATGAATCTGTTGGATTTCTCAAAAAACTTGCTCATTTAAGTGCTTCAGGATGCATTAAACTTAAGAGTTTCCTGCATAGAATGTTTTTACCATCTCTGGAAGTCCTTGACCTTAATTTATGTGCAAGACTTGAACACTTCCCTGATATAGTGAACAACATGAATAAGCCATTGAAGATTTATCTGATAAATACTGCTATTAAAGAGCTACCAGATTCCATTGGTAATCTTATTGGGCTTGTTTGTATAGAGATACCAAGTAGCACAAAACTCAAATATCTACCAAGTAGTTTATTCACATTACCAAATGTTGTTGCCTTTAAAATGGGTGGATGTTCCCAACTTCGAGAATCCTTCAGAAGGTTTGCACAAAGCCCTTCAGCAGCCAATGGTTGTCGTGCGAAAACATTGAACTTTGGAAATGGTGGTTTGTCAGATGAAGATCTCCAAACAATTCTCAATTGCTTTCCAAAATTAGAAGAGTTGATTGCATCAGAGAACAATTTTGTATCTCTCCCTGCATGCATTAAAGAGTCCATTCACTTGACAAGTCTTGATGTTAGTGTTTGCAAGAAGCTTCAAGAAATTCCTGAATGCACCAACTTGAGAATTCTTAATGTCCATCGTTGTGTAAAGCTTAAATACATTTCAGAGTTGCCATCTACTATTCAAAAAGTTGATGCAAGATACTGCTTCTCCCTAACTAAAGAGACGTTGGACATGTTATGGTATCAGGTGTCAAAGGAGATACGTGGATTAGAAATTGTGATGCCCCAAACCGAGATTGCAGAAAGGTTTGACTTTATTGACAATGGAGGTAATCCACGCTTCTGGGCTCGTGGGAAGTTCCCTGTTTTTGCTTTAGCATTGGTGTTTCGTGATGTTAATGAAAAGGCAAGTAATTCTCGGCGGCAACTTGTTGAGCTTCAGTTAATCATCAACGGTCAATGTGTGCCACACAAAGGCTATTACAGCTTCAGAATTGCAGCAGATCATGTGTTAGTTTGTGATCTAAGACTTCTGTTTAGTGAAGAAGAGTGGAAGGGCCTTGATGCATTTCTTGTTCATGATTGGAATCTAGTGTTGGTTTCATATGAAGCACCATCCACCATGACACTAAGCTGTTGGGGAGTTTTTATGTACAAACAAGAAACCAACATGGAAGATGTCCAGTTCATGTGTCCCGACCCAATTAAGTACTCAGATATGGCACTCATATCACCGCCAACAATTCTCAGAAGAGATCCTAAGCAGGAACTAAGGAAGATGATAGACCATATGTGTCTGGATGAAATGTTTGATGGGATGTTGATGGAAACCATGGACTATGAAAAACGAGATGACTTTGCAGATAAAGATTTTGCTGTGGAGCAAATGCATGTTCTAATGGGAGGTTTGAAGGAGATATCAACACAGGCTAAGGATGTATTGGAAGGCAAAGCAGTAGCTAATAGAAACTCCACCCTGGCAATGTTTCTAGAGGCTATGAAGAAACTTGATGAGGAAGATAAGAAAGATGGGCAAGAAACCATTTTCTTTAAGGATCTCGCATTGATACGACTAAAGGATGGAGTGAAGTCACCTATGAAAATAGCAGAAACCTCAACCTCTGGCCATCAGGGAAGTTCAAGCAGTGATCCTCAGCAGCAGGAAATAATTATGGAGATTTTCTCAGAAGGAATGGTTGCAGGACTTCTTGAAGCACAAAATAGCTTTCCTACTCTTGATATAGAGACAATCATGCATGCTGCCTTAGAAAAGGGTAACAGGGTTAGATGGTCATCCCCAGAGTCAGAGGTAGAAAACCCTGTAGACCAAGTAGAAAGGAAGATATACATGGAAGGAGTTATCAATGGACTCCTTGAAGCACAATTGAGCTTTCCCACTCTGGACATACAAGCAACACTAGATGCAGTGCTACTAAAGTATGGAGGGAAGCCACCTAATGAAGTAGGAGGAGAAGCCTCAAGCTCTAGTCATCAGCAAGAAAGCTCAGAGACACAAAGTAATGATCCTGAGCAGCGGAAAATAATGATGGAGATGTTTTGGGATGGAGTGTTGGATGGACTAAACGAAGTTAAGAATAAGTTTCCTTCTCTTCATATAGGGAGAACTGTAACTGATGTCTTTAACAAGGGTAATAGGGTTAGATGTTCCAACCCTGGAACTCCAATGGAAAAGAGGATATATATTGAAGGAATTGTCAATGGCCTCCTTGAAGCACAGCTAAGCTTTCCCACTCTGGACATAAATGCAACACTAGATATTGTGTTAAGTAAGGGGGGCCGTAAAGTTGCAGATAAGAAAGGTAAGCAACCTATGGATTTAAGAGATGGAGAAGCCTCAACCTGTGTTCATCAGAAAAGTTCAGAGGAACAAGGCATTGATCCTCAGCAGCTAGAAATAATGAGGGAGAATTTGTGGCTTGGAATGTTGGATGGACTTCTTGAAGCAAAGAGTAACTTTCCTACTCTTGATATAGAGACAACCATTGTTGCTGCCTTAGAAAAGGGTAATAGGTTTAAATGGTTAATCCCAGACTCAGAGATAGAAATCCCTGAAGGTGAACATGAAGATCCACTGGCCCGTCTAAAAAGGAAGATGTACATGGAAGGAGTTATCAATGGACTCATTGAAGCACAATTGAGCTTTCCCACTCTGAACATACAGGCAACAGCAGATGTTGTGTTAAGTAACCGTAGAGGACAACCTATAGTTCCAAGCTCTGATGATCCTTTGTTGCAAGCATTCAAGATGATGAATCAAGAAAGTTATGAAGCTGAGGCAAGGAGTAAACTCTATTGGAACTTGATAGAGGAACACAGAGCTCTACGTAAGAAATTTGAACAAGTGGAGAATGGAACTGCTGCTTCAGATAAAGATAGTTGTCTTCTTACTTGGAAAAATCAATATGATGAACTGCTAGAGAAGCTCAACACTCGATCTGCTTTGAGTAGCACAGAGATGCACACAAACATTACAAGATATGAGAAGTTGGCTGCTGTTTTGCAAGGAAGAGCTGATGAATTGAAGAGGCTTTATGATGCTAGCATTGAAGGCTTCCAGAACTCAGAAGAGTTTCAAGATTTAATGAGTGTCATATACTTGTATGGACTGAGGGATGGACTACTTGAAGCACAAGTGGTCTTACTAGCTCTGGACATGTACTACATGGACATAACAACTCCAGTGTTTAAGGAGAATGAGGAGTGTGTAGTGACTGATGAGGCTGCCAAAGAAGTATTGGATTGGACTAAAGAGAAAGTTGCAAGCTCTGACGATTCTTTGTTGCAAGTATTCATGATGATGAAGCAAGAAAGTTGTGAATCTGAGACCAAGAGTAAGCTGTACTGGAAGTTGATTGTGGAACACAAAGCTCTGCGCAATAAATTTGAAGAAATTGAAAATGAAACTATTGCTCTAGATAAAGATAGTTGCAATCAATATGAAGAATTGCTAGAGAAGTTCAACACTCAATCTGCTGAGTTTATTTCAGAGAAGCAACACAACCTTGATGGTACTGAGGATGTCCAGGAAAAGGCAACAAAGATTTCTGATTCAAAATCTGCTTTGAGTAACACAGAGATGCAGAAAGACAATAGAAAAGAAGGCTGCAGAGGTGTCACAAAATATGAGAAGTTGGCTGCTGTTTTGAAAGGAAGAGATAAAAAATTGCAGAGGCTTTATGGTGTTGGCATTGAAGGCTTCCAGAACTCAGAAGAGTTTCAAGATCTAATGAGTGTAATATACTTCAATGGACTGAAGGATGGACTCCTTGAAGCACAGGGGATCCTACTTGCTCTGGACATGGACAGAATGACTTCTCCATTGCTTAAGGAGAATGAGGAACATGTTACTCATGAGGCCGCTGATAGTGAAAATCTTGATGGTTCAATCAGTGCAGCAGAAATTCCAAGTCCTACTGATCCAAAAGTTGACAACCCTCCTGATACTTCTGAATCCTCTGGTGAAGAGATTTTTGTCAACTTTGAAGATTTTGGTCACATGTTTTTTTAA 6003 0.3891 MARYGEESHSFSYDVFISFRGEDTRHKFIGHLRKELCRKGINTFIDDKNLRIGEGISPALSKAIEESKISIIVFSENYASFTWCLDELVKILDCTKRSGNKNQVAFPVFYHVDPSHVRHQKESYHKAMIAHENRFGKSSEKVCRWRSALFEIANLKGQHISTGYEIDSIEEIVEQVYANIAPKPLGVGQNPVGLEHRIEEVKSLLDMELTDDTVCMLGIYGLGGIGKTELAKALYNKIVHQFEAASFLANVREKSNKINGMEDLQKTLLSEMLEELETELGSPSKGIYEIKRKLGKKKVLLVLDDVDDREQLKNLAGRCDWFGLGSRIIITTRDRKLLLGHQVEKIYKMTELNDQHSLELFCQNAFGKSHPETGYEDMSSLAVGYAKGLPLALIVIGSNLATERSLEDWELLLKKYERIPDSKIQHVLKISYNSLGDDDAKSIFLDIACFFKGERIEYVEKILEEFDATSNIKVLVNKSLVNVEHGCLEMHDLIQDMGREIVRQESRIPSKRSRLWSHKDVLKVLTEDSGTDAIEGIILDPPQREEVDWSGTAFEEMKWLRILIVRNTSFSTWPKYLPNHLRLLDWEEYPSKSFPSKFHPKEIVVFNLCKSRLTLEEPFKKFSCLINMDLSHNEFITTMPDVSAVQNLRELRLDKCKNLIEVHESVGFLKKLAHLSASGCIKLKSFLHRMFLPSLEVLDLNLCARLEHFPDIVNNMNKPLKIYLINTAIKELPDSIGNLIGLVCIEIPSSTKLKYLPSSLFTLPNVVAFKMGGCSQLRESFRRFAQSPSAANGCRAKTLNFGNGGLSDEDLQTILNCFPKLEELIASENNFVSLPACIKESIHLTSLDVSVCKKLQEIPECTNLRILNVHRCVKLKYISELPSTIQKVDARYCFSLTKETLDMLWYQVSKEIRGLEIVMPQTEIAERFDFIDNGGNPRFWARGKFPVFALALVFRDVNEKASNSRRQLVELQLIINGQCVPHKGYYSFRIAADHVLVCDLRLLFSEEEWKGLDAFLVHDWNLVLVSYEAPSTMTLSCWGVFMYKQETNMEDVQFMCPDPIKYSDMALISPPTILRRDPKQELRKMIDHMCLDEMFDGMLMETMDYEKRDDFADKDFAVEQMHVLMGGLKEISTQAKDVLEGKAVANRNSTLAMFLEAMKKLDEEDKKDGQETIFFKDLALIRLKDGVKSPMKIAETSTSGHQGSSSSDPQQQEIIMEIFSEGMVAGLLEAQNSFPTLDIETIMHAALEKGNRVRWSSPESEVENPVDQVERKIYMEGVINGLLEAQLSFPTLDIQATLDAVLLKYGGKPPNEVGGEASSSSHQQESSETQSNDPEQRKIMMEMFWDGVLDGLNEVKNKFPSLHIGRTVTDVFNKGNRVRCSNPGTPMEKRIYIEGIVNGLLEAQLSFPTLDINATLDIVLSKGGRKVADKKGKQPMDLRDGEASTCVHQKSSEEQGIDPQQLEIMRENLWLGMLDGLLEAKSNFPTLDIETTIVAALEKGNRFKWLIPDSEIEIPEGEHEDPLARLKRKMYMEGVINGLIEAQLSFPTLNIQATADVVLSNRRGQPIVPSSDDPLLQAFKMMNQESYEAEARSKLYWNLIEEHRALRKKFEQVENGTAASDKDSCLLTWKNQYDELLEKLNTRSALSSTEMHTNITRYEKLAAVLQGRADELKRLYDASIEGFQNSEEFQDLMSVIYLYGLRDGLLEAQVVLLALDMYYMDITTPVFKENEECVVTDEAAKEVLDWTKEKVASSDDSLLQVFMMMKQESCESETKSKLYWKLIVEHKALRNKFEEIENETIALDKDSCNQYEELLEKFNTQSAEFISEKQHNLDGTEDVQEKATKISDSKSALSNTEMQKDNRKEGCRGVTKYEKLAAVLKGRDKKLQRLYGVGIEGFQNSEEFQDLMSVIYFNGLKDGLLEAQGILLALDMDRMTSPLLKENEEHVTHEAADSENLDGSISAAEIPSPTDPKVDNPPDTSESSGEEIFVNFEDFGHMFF. 2001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1309 1336 - -
Seca8g00460 2000 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 181 - -
Seca8g00460 2000 Gene3D - 184 346 IPR027417 -
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1946 1984 - -
Seca8g00460 2000 Gene3D Ribonuclease Inhibitor 722 907 IPR032675 -
Seca8g00460 2000 Gene3D Ribonuclease Inhibitor 541 721 IPR032675 -
Seca8g00460 2000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 712 IPR044974 GO:0006952
Seca8g00460 2000 Gene3D - 351 436 IPR042197 -
Seca8g00460 2000 Pfam NB-ARC domain 195 430 IPR002182 GO:0043531
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1429 1447 - -
Seca8g00460 2000 SUPERFAMILY L domain-like 490 880 - -
Seca8g00460 2000 Coils Coil 1655 1675 - -
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1844 1865 - -
Seca8g00460 2000 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Seca8g00460 2000 SMART till_3 12 155 IPR000157 GO:0007165
Seca8g00460 2000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 447 IPR027417 -
Seca8g00460 2000 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Seca8g00460 2000 Coils Coil 1779 1806 - -
Seca8g00460 2000 Gene3D - 7 183 IPR035897 -
Seca8g00460 2000 Pfam TIR domain 13 176 IPR000157 GO:0007165
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1429 1456 - -
Seca8g00460 2000 PRINTS Disease resistance protein signature 690 706 - -
Seca8g00460 2000 PRINTS Disease resistance protein signature 216 231 - -
Seca8g00460 2000 PRINTS Disease resistance protein signature 386 400 - -
Seca8g00460 2000 PRINTS Disease resistance protein signature 293 307 - -
Seca8g00460 2000 MobiDBLite consensus disorder prediction 1314 1336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00460 Seca-Chr8 5362326 5370451 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00460 4 825 WRKY Transcription Factor Family AT4G12020 30.986 4.75e-90 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00460 - - gsj:114376984 1748.41