Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00458 ATGTTGGATTCATGTAACAGGTACGAAAATGATTTTATTGAAAAGATTGTTAAGCAACTTTCTGCTGACATGGCTCCTAAGACTATAGATGTTGGTCCAGACCCAATTGGACTTGAGCATCACATAGAAAAGTTGAAGTCACTTTTAGACATAAAGCCCAACGATGACTCTGTATGCATGTTGGGCATATATGGACTTGGCGGAATAGGGAAAACAAAACTCGCCAAAGTTTTGTACAACAAGATTGTCAACCAATTTGAAGCTGCAAGTTTTCTTGCCAATGTTAGGGAGAAATCAAGCAAAAGCAATGGCCTGGAAGATTTGCAAAAGACACTTCTATCAGAGATGTTGGAGGAGCTAGAAACCAAGTTGGGAAGTACAAGTAGAGGAATCTATGAAATAAAATGGAAGCTTGGAAAGAAAAAAGTTCTTTTGGTTCTTGATGATGTTGATGACAGAGAACAGTTGAATAACCTAGCAGGAAGTTGCTATTGGTTTGGTTTAGAAGTAATAGCCTCCAATTTGGCTGTTGAAAAATGTCCAAAATATTGGGAATATGCAATGGAAAATTATGAGAAGATTCCAAATCAAAAGATTCAAGATGTGCTCAAAATAAGCTATGATGGATTACAAAAAGATGCCAAGAGTGTTTTCCTAGACATAGCTTGCTTCTTCAAAGGGGAGAGAACAAAGTATGTTGAAAAGATACTTGAGGAAACCAATGCAACATTTAATATTAAACTACTTGTTAACAAATCTCTCTTAACCATTGAACATGGCTACTTGGAGATGCATGATCTAATACAAGATATGGGTAGAGAGATTGTTAACCACGAGGCAGAAATTCCAAGTGAACGTAGCAGATTATGGGTTCATGATGATGTCATTAATATATTATCTGAAGATTTTGGAAGTGAGAAAATTATAGGTATAATGCTTGATCCACCCCAAAGAGAAGAAGTGGATTGGAGTGGTGTAGCCTTTGAGAAGATGAAATGGCTCAGAATTCTCATTGTTCGAAATACATCCTTTACAACAGGGCCGAAACATCTGCCAAATCATTTAAGGGTGCTTGATTGGGAGGAGTACCCTTCAAACTCCTTCCCACCAAAATTTCATTCGAAGAAAATCACTGTCTTCAATTTGTGCAAAAGCTATATTAGACTGGAAGAGCCATTTAAGAAATTTTCATGTTTGACTAACATGAATTTCTCACATAATCAATCTATCACCACAATTCCTGATGTGTCAGAAGTTCCAAATTTGACAAAATTGAGACTTGATAATTGTAGAATCCTAACTGTGGTCCATGAATCCGTTGGATTTCTCAAAAATCTTTCTCACTTTAGTGCTTCACGATGCCACAAACTTAGAATTTTTCTGCAGAGAATGTTTCTACCATGTCTGGAAGTCCTTGACCTTAATTTATGCATAAGACTTGAAAACTTCCCAGACATAGTGAACATCATGAATAAGCCATTGAAGATATATATGATAAATATTGCTATTAAGGAGATACCGGATTCCATTGGTAATCTTATTGGGCTTGTTTGGATGGAGATACCAAGTAGCATGAAACTTATATATCTTCCAAGTAGCTTATTCTTGCTACCAAATATTGTTGCCATTATAATTAGTGGATGTTCTCAACTTCAAGAATCCTTCAGAAGATTAGAAGAGTTGATTGTGCCAGAGAACAATTTTGTATCTATCCCTGCATGCATTAAAGAGTCTGTTCACTTAACAAGTCTCGATGTGAATGCTTGCAAGAAACTTGAAGAAATTCCTAAATGCACTAATGTGAGAATTCTTAATATCCATGGTTGTCTGAATCTTAAAGACATTTCAGAGTTGTCATCTACTACACAGAAAGTAGATGCAAGATATTGCTTCTCCCTATCTAAAGAGACATCACACATGTTATGGTATCAGGTGTTCAAAGAGATACATGGATTAGAAGTCGTGATGCCCACCCTAACTGAGATTCCAGATTGGTTTAGCTTTAGAGGCATTGGAGGGAATCCACATTTCTGGGCTCGTGGGAAGTTTCCCATTGTTGCTATAGCTTTGGTGTTTCAGGGTGTGAAGGAAATAACCAGCAATAAATCTCGTCGCCAACTTGTTGAGCTTCAGTTGTTTATCAATGGTCAATGTGTGCCTCGCAAAGGCTATTACAATTTCAAACTAGAAAAATATCATGTGTTAATTTGTGATCTACGACTTCTGTTTAGTGAAGAGGAATGGATAAGCCTTGATAAATTTCTTGAGCATGATTAG 2277 0.3667 MLDSCNRYENDFIEKIVKQLSADMAPKTIDVGPDPIGLEHHIEKLKSLLDIKPNDDSVCMLGIYGLGGIGKTKLAKVLYNKIVNQFEAASFLANVREKSSKSNGLEDLQKTLLSEMLEELETKLGSTSRGIYEIKWKLGKKKVLLVLDDVDDREQLNNLAGSCYWFGLEVIASNLAVEKCPKYWEYAMENYEKIPNQKIQDVLKISYDGLQKDAKSVFLDIACFFKGERTKYVEKILEETNATFNIKLLVNKSLLTIEHGYLEMHDLIQDMGREIVNHEAEIPSERSRLWVHDDVINILSEDFGSEKIIGIMLDPPQREEVDWSGVAFEKMKWLRILIVRNTSFTTGPKHLPNHLRVLDWEEYPSNSFPPKFHSKKITVFNLCKSYIRLEEPFKKFSCLTNMNFSHNQSITTIPDVSEVPNLTKLRLDNCRILTVVHESVGFLKNLSHFSASRCHKLRIFLQRMFLPCLEVLDLNLCIRLENFPDIVNIMNKPLKIYMINIAIKEIPDSIGNLIGLVWMEIPSSMKLIYLPSSLFLLPNIVAIIISGCSQLQESFRRLEELIVPENNFVSIPACIKESVHLTSLDVNACKKLEEIPKCTNVRILNIHGCLNLKDISELSSTTQKVDARYCFSLSKETSHMLWYQVFKEIHGLEVVMPTLTEIPDWFSFRGIGGNPHFWARGKFPIVAIALVFQGVKEITSNKSRRQLVELQLFINGQCVPRKGYYNFKLEKYHVLICDLRLLFSEEEWISLDKFLEHD. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00458 758 Gene3D - 15 169 IPR027417 -
Seca8g00458 758 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 168 613 IPR044974 GO:0006952
Seca8g00458 758 PRINTS Disease resistance protein signature 137 151 - -
Seca8g00458 758 PRINTS Disease resistance protein signature 60 75 - -
Seca8g00458 758 PRINTS Disease resistance protein signature 464 480 - -
Seca8g00458 758 Gene3D - 170 211 IPR042197 -
Seca8g00458 758 SUPERFAMILY L domain-like 264 621 - -
Seca8g00458 758 Gene3D Ribonuclease Inhibitor 321 497 IPR032675 -
Seca8g00458 758 Gene3D Ribonuclease Inhibitor 498 668 IPR032675 -
Seca8g00458 758 Pfam NB-ARC domain 39 159 IPR002182 GO:0043531
Seca8g00458 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 221 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00458 Seca-Chr8 5329129 5335156 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00458 199 585 WRKY Transcription Factor Family AT4G12020 34.058 1.69e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00458 - - var:108338187 814.298