Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00456 ATGGATGTGACCAAGTTACATAACTCTGATCATGACAAGAAAGATGATGATGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTGAGAAGAAAAGTGGACAATAAGCCTCTTAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCATGGGATCTTCCAAAAGAAGTGAGTTCTGTGGGGGAGAAGGAATGGTATTTCTTTTGCATAAGAGGAAGAAAATACAGGAACAGCATAAGGCCTAACAGAGTGACAGGATCTGGATTCTGGAAAGCAACAGGGATTGACAAGCCTATATACTGTGTTAAAGAACCCCATGAATGCATTGGCCTTAAGAAATCTTTGGTTTATTACCGTGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTACCACCCAATGGAAAATCAAACAATAATCCACAAGCTAATGATGTTCAAGAAGCTATTAGCAACCTTATTAATGTGCTTTTGTTGGGGGGTTTGCAGGAAGTGTGGACCCTATGCCGAATATTGAAACGAATCCCGTCATACAAGAAATACGCACCAAATTTGAAAGACTCATCATCATCATCATTAGTGATGACCAACAAGCCAAACCCCACTACTAGTACTAATTCTAAAACATGCAGCTTAGAATCTGACAACGGCAAGCCATACTTGACTTTCACTACAAACTCACCACTACTCATTCAACAAAATGAAACGAAACCTGCAGCAGTTATTGGACAGATCAATAACCACTTATTTGTACCTCACCAGGCTCCAACAACGTTGTCTTACTCATCAAGCTTTTGGAATCATCAGAATGTGGTGGATGATCATGATAATGCTTTTGCAAATGAGAATTGGGATGATCTCAGATCCGTGGTTCAGTTTGCCATTGATCCATCAAAGGTTTATGATTGTAAAGAATTTAATTAA 978 0.3937 MDVTKLHNSDHDKKDDDEVVLPGFRFHPTDEELVGFYLRRKVDNKPLRIELIKQIDIYKYDPWDLPKEVSSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKSNNNPQANDVQEAISNLINVLLLGGLQEVWTLCRILKRIPSYKKYAPNLKDSSSSSLVMTNKPNPTTSTNSKTCSLESDNGKPYLTFTTNSPLLIQQNETKPAAVIGQINNHLFVPHQAPTTLSYSSSFWNHQNVVDDHDNAFANENWDDLRSVVQFAIDPSKVYDCKEFN. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00456 325 Gene3D NAC domain 29 195 IPR036093 GO:0003677|GO:0006355
Seca8g00456 325 FunFam NAC domain-containing protein 35 29 195 - -
Seca8g00456 325 ProSiteProfiles NAC domain profile. 20 192 IPR003441 GO:0003677|GO:0006355
Seca8g00456 325 MobiDBLite consensus disorder prediction 207 229 - -
Seca8g00456 325 Pfam No apical meristem (NAM) protein 22 149 IPR003441 GO:0003677|GO:0006355
Seca8g00456 325 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 270 - -
Seca8g00456 325 SUPERFAMILY NAC domain 19 190 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00456 Seca-Chr8 5300993 5304774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00456 17 192 NAC Transcription Factor Family AT5G39820 62.360 8.57e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g00456 NAM 1.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00456 - - gmx:100784323 486.108