Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00434 ATGTCATCCAGCAATTCTCTGAATGTGGAATTGTCAAAGAAGACTTCATTTTTGGGTCTGAAAAGATGGGTTTTGATTGGGATAGGTGTTGGTGCATTTATAGTTCTGATTCTTTGTATATTATCTATATGGGTGATGTTTCGGAGAAAGTCTAAGAGATCTCTGGACAAGTACTCTGTATCTCAAATACCAAATGTCTCAAAAGATATCAATGTCGACAAGGTTGGAGCGCAGAATTCTCATGTTCAACAAGAAAATGTGTTTATTCCTGTTCATGATAAGGCGAATGATAATAATTCAGACAAGGTATCAGCTCATTTGGGGATGAGCAAATCCAGTGATCCTGACAATGTCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCACTCTCAGGGGAAGAAGGAAGCTCTGGGAATGTTAAGAAGCAGTCTACATTATCATATGGAGGACTGGCGACTACCTCTCCTTTAATTGGCTTGCCGGAATTTTCTCATCTTGGGTGGGGCCACTGGTTTACACTTAGAGATCTGGAACAAGCAACCAATCGCTTCTCAGCTGAGAACATTCTTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGCAGGCTGATCAATGGAACAGAGGTGGCAGTGAAAAAACTGCTTAACAATTTGGGACAGGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGTCATGTTAGGCATAAGCATCTTGTGCGCCTGCTCGGATATTGTGTAGAAGGTGTTCACAGAAAGATCAAAATTGAACAGAAGCTTTTCTCTATTTTATGTTTCTTTCTCTCTTATAATGAAAGTACTTTCCAATTGATATTCAGGCTGCTGATATATGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGACATGCGCCAGCATGGGACACTTACCTGGGAGGCCCGCATGAAAGTTTTGCTTGGCACAGCAAAAGCGCTTGCTTATTTACATGAAGCAATAGAACCAAAAGTTATTCACCGGGACATAAAGTCTAGCAACATATTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTAATGGGGACCTTTGGTTATGTGGCACCGGAATATGCTAACAGTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTTATGCTGGAAGCGGTTACTGGAAGGGACCCTGTAGACTATGCACGTCCTGCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGGCAAGGAGGGCTGAGGAAGTTGTGGACTCAAGCCTCGAAGTTAAACCATCAGCGCGTGCTTTAAAACGTTCCCTTCTCGTTGCACTTAGGTGTATTGATCCTGATGCAGACAAGAGACCCAAAATGAGTCAAGTTGTAAGGATGCTCGAAGCTGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAGGAGCGGCACTAGCAGCGTGGAAATTGAAGCAGTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGGTGGGGAATTCTGAAAGCCATGTGCCTGAAACAACTCAAGGATAG 1617 0.423 MSSSNSLNVELSKKTSFLGLKRWVLIGIGVGAFIVLILCILSIWVMFRRKSKRSLDKYSVSQIPNVSKDINVDKVGAQNSHVQQENVFIPVHDKANDNNSDKVSAHLGMSKSSDPDNVSQCSSIYHHERGFSSLSGEEGSSGNVKKQSTLSYGGLATTSPLIGLPEFSHLGWGHWFTLRDLEQATNRFSAENILGEGGYGVVYRGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKHLVRLLGYCVEGVHRKIKIEQKLFSILCFFLSYNESTFQLIFRLLIYEYVNNGNLEQWLHGDMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLMLEAVTGRDPVDYARPANEVNLVEWLKMMVGARRAEEVVDSSLEVKPSARALKRSLLVALRCIDPDADKRPKMSQVVRMLEADEYPFREDRRNRRSGTSSVEIEAVKDISGPSDAEKVGNSESHVPETTQG. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00434 538 Coils Coil 208 228 - -
Seca8g00434 538 MobiDBLite consensus disorder prediction 494 538 - -
Seca8g00434 538 ProSiteProfiles Protein kinase domain profile. 188 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00434 538 SMART serkin_6 188 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00434 538 Gene3D Phosphorylase Kinase; domain 1 170 261 - -
Seca8g00434 538 Pfam Protein kinase domain 190 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00434 538 Gene3D Transferase(Phosphotransferase) domain 1 292 503 - -
Seca8g00434 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Seca8g00434 538 CDD STKc_IRAK 194 488 - -
Seca8g00434 538 FunFam Putative receptor-like serine/threonine-protein kinase 292 502 - -
Seca8g00434 538 FunFam serine/threonine-protein kinase PBS1-like 165 262 - -
Seca8g00434 538 PANTHER OS01G0323000 PROTEIN 1 507 - -
Seca8g00434 538 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Seca8g00434 538 SUPERFAMILY Protein kinase-like (PK-like) 172 489 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00434 Seca-Chr8 4978490 4982902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00434 19 490 Trihelix Transcription Factor Family AT1G70460 37.526 3.13e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca8g00434 Pkinase 4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00434 - - gmx:100778444 901.353