Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00433 ATGGCAAATGAGAAAGACCCTTATTTTGATCCCACCTTGTATCACAACCACCACCATGATGATGAGCTCAATAATCATCCCCCATTTAGCTTTCCATTCTTTAGGGAAAACCACACAACACCAACACAAAACTTTCAAGGATTTGATCCTTCTCATGCCACTTTCACTGACTACTTACATGGTAACAATTCCATGGATTACTACAACACTCTCTCAAAAGCCTTTGACTTGTCTTGCTCATCATCTGAAGTGATCTCTTCCTCCATTGATGATAAGAAACCCAAAGCAGCAGGAGACTCAGTGGGGAACCAATCAACACCCAATTCCTCAGTCTCTTCCTCATCTAATGAAGCAGATGCAGTCACAGAAGAAGACTCAACCAAAACCAAGAATAAGGATAAGCAGCCAAAAGTGTGTGAAGAAGATGAAAAGTCTAAGAAAGAGAACAAGGCCAAAAAGAAAGAGAAAAAGGCAAGAGAGCCACGGTTTGCGTTCTTGACTAAAAGTGAGATTGATCACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCCTACCCAAGGAGCTACTACAGATGCACTAGTCAGAAATGCAGTGTAAAGAAAAGGGTGGAGAGGTCATGCCAAGACACATCCATTGTGATGACAACCTATGAAGGGCAACACAACCATCACTGCCCAGCAACACTGAGGGGCAATGCAGCCACTATGTTGTCTTCACCTTCCATTTTTGGTTCCACTTCTATGGGATTGGGCCAAAACTTACCCCAAGACTTCCTTGCTCAGTTTCTTCCAAGTTATGATCACCAAAATCCCAATATGTTCCACCACCACCAAAACCATCCCCAGCAACAGCAACAACAACAACAACAGTTTCATGACTATGGATTGTTGCAAGATCTACTACCATCATTCCAAGGCAGACAAGGGCCTTGA 957 0.4284 MANEKDPYFDPTLYHNHHHDDELNNHPPFSFPFFRENHTTPTQNFQGFDPSHATFTDYLHGNNSMDYYNTLSKAFDLSCSSSEVISSSIDDKKPKAAGDSVGNQSTPNSSVSSSSNEADAVTEEDSTKTKNKDKQPKVCEEDEKSKKENKAKKKEKKAREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSCQDTSIVMTTYEGQHNHHCPATLRGNAATMLSSPSIFGSTSMGLGQNLPQDFLAQFLPSYDHQNPNMFHHHQNHPQQQQQQQQQFHDYGLLQDLLPSFQGRQGP. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00433 318 MobiDBLite consensus disorder prediction 99 120 - -
Seca8g00433 318 SMART WRKY_cls 174 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00433 318 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00433 318 Coils Coil 137 157 - -
Seca8g00433 318 MobiDBLite consensus disorder prediction 121 160 - -
Seca8g00433 318 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 295 IPR044810 GO:0003700
Seca8g00433 318 MobiDBLite consensus disorder prediction 277 298 - -
Seca8g00433 318 ProSiteProfiles WRKY domain profile. 169 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g00433 318 SUPERFAMILY WRKY DNA-binding domain 167 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g00433 318 MobiDBLite consensus disorder prediction 89 160 - -
Seca8g00433 318 FunFam WRKY transcription factor 57 160 234 - -
Seca8g00433 318 Gene3D WRKY domain 158 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00433 Seca-Chr8 4966715 4968547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00433 41 239 WRKY Transcription Factor Family AT4G18170 55.665 4.59e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g00433 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00433 - - aprc:113847247 372.089