Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00431 ATGCAGGAGCCCCTTCTGAGCCTTTTCTCCAGGAAAGGAGAATCACATTCACTATCACCCAAGGAACAATCTGCCCATGATCTTGCTCTTGCCCCATCACTGCCTCAATCAAGTTCACCTCATATCATCAATGAAGCCAAGACCAAGAGTCCTCCTTATATTAACCTCATAGCCAACTTGAGCTTCAGGAAAGGGAACATTACTCATCGCTCCCGCTCTGCTCCATCCATATTATTCACTGACACAAGGGTAGATTTTCATGAGCCCTCTGAATCCAAACCTGCAAACAAGTCATCAACTTTAATAGTTAGGATATCTTTCATTGGTGTTTTCTTGTATGTGGCAACTGGGGTTGTAGTGTACTTAACAAGTGGGAGTTTCAAGGGCACTACTACATTCAGGCCTGTAGATGCTGTTTACTTTACAGTGGTAACTCTCTGCACTATTGGATATGGTGATATTGTTCCTGACTCCATATTTACCAAGATGTTTACATGTGGTTTCATTTTGGTGGGTTTTGGATTTATTGGTTTTCTGCTTAATGAGTTGGTTGCATATATTTGTGATACACATGAGGCATTCTTATTGAGCATGATGGATGAGAATCGATATAAGAAAATTCTCAGGACATATATGGTTGACGTTGAGAAAGGAAGAATGAGGATAAGAACTAAAGTTTGTCTATCTTTGGCTGTTGTCATTGGCTGCATTGCTATAGGAACAGTTGCTGCACGCTTTCTAGAGGATCTAAATTGGGCTGACAGCTTTTATCTCTCCATTACTTCTGTTACAACAGTTGGTTATGGGGATTATGCTTTCAGAACTGTAACTGGAAGATGTTTTGCAAGTCTATGGCTTTTGGTAAGCACACTGGCAGTTGCCAGGGCCTTTCTATACCTCACTGATTATAGCATTAACAAGAGAAGTCGTGAGATGGCAAAGTGGGTTCTTCAGAAGAAGATAACCTTATCAGATTTAGCAGCTGCAGACCTTGATAATGATGGATCAATCAGATCACATGCCAGCTTCATTTTTTATAACTTTTTACTTTTGTGCAGTAAGTCTGAATTTGTGATATACAAGCTTAAGCAAATGGGGAAGATTACTGAGATAGACATTCTGCAAATAAGCAAACAATTTGATTCCTTGAACCATGGAATGTATGGCAAGATCACTCTAGCTGACCTCATGGAAAAGGTCTAA 1203 0.4007 MQEPLLSLFSRKGESHSLSPKEQSAHDLALAPSLPQSSSPHIINEAKTKSPPYINLIANLSFRKGNITHRSRSAPSILFTDTRVDFHEPSESKPANKSSTLIVRISFIGVFLYVATGVVVYLTSGSFKGTTTFRPVDAVYFTVVTLCTIGYGDIVPDSIFTKMFTCGFILVGFGFIGFLLNELVAYICDTHEAFLLSMMDENRYKKILRTYMVDVEKGRMRIRTKVCLSLAVVIGCIAIGTVAARFLEDLNWADSFYLSITSVTTVGYGDYAFRTVTGRCFASLWLLVSTLAVARAFLYLTDYSINKRSREMAKWVLQKKITLSDLAAADLDNDGSIRSHASFIFYNFLLLCSKSEFVIYKLKQMGKITEIDILQISKQFDSLNHGMYGKITLADLMEKV. 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00431 400 FunFam Two-pore potassium channel 3 209 323 - -
Seca8g00431 400 FunFam Two-pore potassium channel 2-like 101 197 - -
Seca8g00431 400 PRINTS Two pore domain K+ channel signature 264 273 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca8g00431 400 PRINTS Two pore domain K+ channel signature 144 172 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca8g00431 400 SUPERFAMILY Voltage-gated potassium channels 199 320 - -
Seca8g00431 400 Gene3D - 191 329 - -
Seca8g00431 400 MobiDBLite consensus disorder prediction 1 27 - -
Seca8g00431 400 Gene3D - 90 190 - -
Seca8g00431 400 Pfam Ion channel 232 302 IPR013099 -
Seca8g00431 400 Pfam Ion channel 110 186 IPR013099 -
Seca8g00431 400 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 136 375 IPR003280 GO:0005267|GO:0016020|GO:0071805
Seca8g00431 400 SUPERFAMILY Voltage-gated potassium channels 98 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00431 Seca-Chr8 4908802 4910946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00431 64 398 Ion Channels AT4G18160 48.214 2.56e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00431 K05389 - gmx:100789639 555.829