Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00427 ATGGATCGAAAGCAAGAACAGGACAAGGGGAACCCGAATATGTCTGGCATTGATGTTACTCTAATATCTCCCAAAGTTCCAAAAGCAGTTTCACCAGTTTCTTCTGCAGCAGAAGGGGAAACCTTGAGGCGGCCTCGTGGCCGGCCGGCTGGCTCTAAAAACAAACCTAAGCCACCAATAATTGTCACCAGAGACAGTGCTAATGCACTCAAGGCTCATGCCATGGAAGTGAGCTCTGGCTGTGATGTGAATGAAAGTTTGTTAAACTTTGCAAGGAGAAAACAACGTGGCCTTTGCATACTTAATGGGACTGGCTGTGTAACAAATGTAACACTGCGCCAGCCAGCCTCATCTGGTGCCATTGTGACCCTTCATGGTCGTTTTGAGATTCTCTCATTGCTGGGGTCAATCCTTCCCCCACCAGCACCACCAGGGATCACAGGCCTTACAATATACTTAGCAGGTGCTCAAGGGCAAGTTGTGGGAGGTGCTGTAGTTGGTGCTTTGATTGCTTCAGGCCCAGTTGTAATCATGGCTGCATCATTCATGCATGCTACTTATGATCGTCTGCCACTTGAAGATGATGAACTTGCTGCTGCAATGCAGAATCAGCATTACCAAAATGGACGCACCCATCATCTTGATATCTCAGACTTATATGCAATGCCACAGAATCTGCTCATGAATGGTGCAATGCCCCCAGAGATATACTCTTGGGCACCAGGGAAGAACTTGTCAAAAACCTGA 747 0.4752 MDRKQEQDKGNPNMSGIDVTLISPKVPKAVSPVSSAAEGETLRRPRGRPAGSKNKPKPPIIVTRDSANALKAHAMEVSSGCDVNESLLNFARRKQRGLCILNGTGCVTNVTLRQPASSGAIVTLHGRFEILSLLGSILPPPAPPGITGLTIYLAGAQGQVVGGAVVGALIASGPVVIMAASFMHATYDRLPLEDDELAAAMQNQHYQNGRTHHLDISDLYAMPQNLLMNGAMPPEIYSWAPGKNLSKT. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00427 248 Gene3D - 69 213 - -
Seca8g00427 248 FunFam AT-hook motif nuclear-localized protein 70 211 - -
Seca8g00427 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 72 182 IPR005175 -
Seca8g00427 248 MobiDBLite consensus disorder prediction 1 60 - -
Seca8g00427 248 ProSiteProfiles PPC domain profile profile. 67 205 IPR005175 -
Seca8g00427 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 67 199 - -
Seca8g00427 248 CDD DUF296 73 153 IPR005175 -
Seca8g00427 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 210 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00427 Seca-Chr8 4899497 4900243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00427 26 245 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 74.208 5.86e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00427 - - gmx:100804941 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00427 8 4899497 4900243 Seca8g00427 8 4899497 4900243 ECH