Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00422 ATGATGTTCCCAATGGTGCTTCTCAGGCTTGCAGACTGGATTTTGTACCAGCTGTTAGCTAACTCATGTTATAGAGCAGCAAGGAAAATGAAAAGTTATTGGTTCCATTTGGGGTATTTGTCATCTAAACCACCACCTCAACCTTCCTCTTTTCCTAGTATTACCAAATGTGATTTGGAGTTTAGAGGGTCACAGACACTTGCTTGTGACATTCATAGAGTCCTTTTAAGGTCCCACTCTTTCTTTCCTTATTTCATGCTTGTTGCCTTTGAAGGTGGCAGCATTTTCAGGGCAATCCTCTTGCTTTTGTCATGTCCTGTGTTATGGATTTTAGACTATGAGCTAGAGCTCAAAGTCATGACTTTCATCACCTTTTGTGGGTTAAAAATAAAGGACATGGAAAGTGTTTCAAGGGCTGTTTTACCAAAGTTTTATTTGGAGAATCTCAATCTCCAGGCTTATGAGGCTCTGGCTTCAGCAGGGTCTAAAGTTGTCTTCACAAATGTGCCTAGAGTGATGGTAGAAGGTTTTCTCAAAGAGTATTTGAGTGTCGGTGATGTTATAGGTACAGAGTTACACACTGTTGGATGCTACTTCAGTGGTTTGTTCTCTGGCTCTGGCTTACTTATGAAGCATAGAGCTCTTAAGGATTATTTTGGAGATAAAAAGCCTGATATTGGAATTGGAAGTTCAAGTGTCCATGATCACCTTTTCCTTTCCCTTTGCAAGGAAGCTTATGTGGTGAACAATGAAGAGGGCAAGAATAGTCCAAATTCAGTGATGACAAGGGACAAATATCCAAAGCCCCTAATATTTCATGATGGAAGACTAGCATTCTTGCCAACTCCCTCAGCAACTCTTTTTATGTTCATGTGGCTTCCAATTGGAATTCTTTTGGGTATTTATAGAATCCTTGTGGGTATTTTCCTTCCTTATGAATGGGCAATGATATTAGGAGTTTGGAGTGGTATAGATCTGCATGTCAAAGGCTGTATTCCTGAAAGGTCAGAACCTAAGAAAGGGGTTCTCTATGTTTGCACACATAGGACACTTTTGGATCCAGTTTTCCTAAGCACAAGTTTAGCAAAGCCTTTGACTGCAGTCACATATAGCTTAAGCAAGGTGTCTGAGTTCATAGCCCCTATTAGGACAGTTAGATTAACAAGGGACAGAAAAAAAGATGGTGACACCATGCAGAGGCTTCTAAGAGAAGGGGATTTGGTGGTGTGTCCTGAAGGAACAACTTGTAGGGAGCCATATCTATTAAGATTCAGCTCACTGTTTGCAGAATTGGCTGATGAGATAGTGCCTGTAGCTATGAATACACATGTGACCATGTTCTATGGGACCACAGCTAGCGGATTGAAATGCTTGGACCCAATTTTCTTTTTCATGAATCCAAGGCCTAGTTATTACATTCAAATTCTTGAAAAGGTACCTAAAGAACTCACATGTGCTGGAGGAAAGTCAAGCTGTGAAGTGGCTAACTATATACAGAAACAATTGGGTGATGCTTTGGGATTTGAGTGCACCACTCTTACAAGGAGGGATAAGTACATGATGCTAGCAGGGAATGAAGGGATTGTTCAACAAGACAAATGGAAAAATTGCTCTTGA 1617 0.4069 MMFPMVLLRLADWILYQLLANSCYRAARKMKSYWFHLGYLSSKPPPQPSSFPSITKCDLEFRGSQTLACDIHRVLLRSHSFFPYFMLVAFEGGSIFRAILLLLSCPVLWILDYELELKVMTFITFCGLKIKDMESVSRAVLPKFYLENLNLQAYEALASAGSKVVFTNVPRVMVEGFLKEYLSVGDVIGTELHTVGCYFSGLFSGSGLLMKHRALKDYFGDKKPDIGIGSSSVHDHLFLSLCKEAYVVNNEEGKNSPNSVMTRDKYPKPLIFHDGRLAFLPTPSATLFMFMWLPIGILLGIYRILVGIFLPYEWAMILGVWSGIDLHVKGCIPERSEPKKGVLYVCTHRTLLDPVFLSTSLAKPLTAVTYSLSKVSEFIAPIRTVRLTRDRKKDGDTMQRLLREGDLVVCPEGTTCREPYLLRFSSLFAELADEIVPVAMNTHVTMFYGTTASGLKCLDPIFFFMNPRPSYYIQILEKVPKELTCAGGKSSCEVANYIQKQLGDALGFECTTLTRRDKYMMLAGNEGIVQQDKWKNCS. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00422 538 SMART plsc_2 342 443 IPR002123 GO:0016746
Seca8g00422 538 Pfam Acyltransferase 333 435 IPR002123 GO:0016746
Seca8g00422 538 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 281 530 - -
Seca8g00422 538 PANTHER ANCIENT UBIQUITOUS PROTEIN 65 532 - -
Seca8g00422 538 CDD LPLAT 323 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00422 Seca-Chr8 4862650 4864947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00422 1 530 Acyl Lipid Metabolism Gene Families AT1G06520 59.354 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00422 K13508 - gmx:100803875 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00422 8 4862650 4864947 Seca8g00422 8 4862650 4864947 ECH
Seca8g00422 8 4862650 4864947 Seca6g03013 6 96181151 96184297 PCT
Seca8g00422 8 4862650 4864947 Seca8g00422 8 4862650 4864947 PCT