Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00419 ATGATTCCGCAACCAGAACTCGACTTCAATCCCAGTTATCTCAAACTATATTACGGAAAGCTGTTTCCTTTTGCTGATATTTTTAGATGGGTGTCTTATGGCAATGATGGGAAGCACCCTGGTTGTGATCAATCCTACTTTGGCCGAAGAGAGTTTGCTTTCACTCTGGACAATGACATATTTCTGCGCTTCCAATCTTTCAACAATGCCCTTGAGCTCGAAAACTCCACCAAAGAAAAGTGCCCTTTCAAGATAGACATAGGACCTGTCTACACTGTTGATCCTGCAAAAAGGCACGCCTATGCACAGGGTGATAATAATATCTTCACTCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGCTGCTCAGGTGCTGACGTGTGCTTGGATTGCTGGCCATTGATGACTATAGCTATCAAAGTGATCAACACTGCCTTAAGAGATGACTTTGGTTTCAAACACATTCTCTGGGTCTTTAGTGGACGCAGAGGTGTTCATTGTTGGGTCTGTGATGGGAAGGCGAGAAGGTTGACTAATGAGCAAAGAGCTGCTATTGCTGACTATTTTCGTGTCTACAAGGGCAATGAAAATAGTCATAAGAAGGTTTCTTTGATGGGTTCTGCTCTTCATCCTTTCTTGGCGACATCATACACTAACGTTCTCAAGGACTATTTTGAGAAAAAACTGCTTACGAGTCAAAATTTACTTGCTACTGAGGAGAGATATGAGAAGATCCTAAACATGATTCCTGATGAATTATGGGTTACTTTTGCAGCTGTTGCTTCTGAACTTAGGGGAAAATGGCAAGATAGTAGGCGGGCCTCTAGCACAAAAGAAGACATTAATGTTGTGCGATGGGAACAATGCAAACAGTTGCTGCAATCTGGAAAACATAAGGCACAAGGGCTGCGTAGATGTGTTGAAGAGATTGTGTTTTTCTTTACTTACCCCAGGCTAGATATGGAGGTTTCAAAACATATGAATCATTTGCTTAAAGCACCGTTTTGTGTACATCCAAAAACTGGCCGTGTCTGTGTCCCTATTGACCCAACTCGGTGTGAGGAGTTTGATCCTACTACAGTACCCACCCTTTCCCAGCTTTTAGATGAGCTTAATAATGAAGGCTCAAGAGCTGATGTTGATGGTGGTATGTTAATTTTGTACTCAGATAATCTGTTTCCTTCCTATAAAAACCTCTTATTGCCATCTCCACATGACTTCTAA 1254 0.4147 MIPQPELDFNPSYLKLYYGKLFPFADIFRWVSYGNDGKHPGCDQSYFGRREFAFTLDNDIFLRFQSFNNALELENSTKEKCPFKIDIGPVYTVDPAKRHAYAQGDNNIFTPVERELIFDIDMTDYDDVRYCCSGADVCLDCWPLMTIAIKVINTALRDDFGFKHILWVFSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSHKKVSLMGSALHPFLATSYTNVLKDYFEKKLLTSQNLLATEERYEKILNMIPDELWVTFAAVASELRGKWQDSRRASSTKEDINVVRWEQCKQLLQSGKHKAQGLRRCVEEIVFFFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPTRCEEFDPTTVPTLSQLLDELNNEGSRADVDGGMLILYSDNLFPSYKNLLLPSPHDF. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00419 417 PANTHER DNA PRIMASE SMALL SUBUNIT 8 389 - -
Seca8g00419 417 FunFam DNA primase 2 396 - -
Seca8g00419 417 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 15 380 IPR014052 GO:0003896|GO:0006269
Seca8g00419 417 Pfam DNA primase small subunit 118 359 IPR002755 GO:0003896|GO:0006269
Seca8g00419 417 CDD AE_Prim_S 23 368 IPR014052 GO:0003896|GO:0006269
Seca8g00419 417 Gene3D DNA primase, PRIM domain 3 410 - -
Seca8g00419 417 SUPERFAMILY Prim-pol domain 10 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00419 Seca-Chr8 4820209 4826001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00419 3 387 Core DNA Replication Machinery Family AT5G41880 67.532 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00419 K02684 - gmx:100780574 724.161