Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g00418 ATGGCTGGTGGCTTGTCCTGCAGTTTGAATTCAGCGGAGATGGATTTCTTCTCCGAATATGGCGATGCCAGCAGGTACAAAATTCAAGAAGTCATTGGGAAAGGAAGTTATGGTGTTGTTTGTTCAGCCATTGACACTCACACTGGTGAAAAGGTTGCAATAAAAAAGATTCATGATATCTTTGAGCATATATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCACGTCATGCTTCCTCCTTCTAGGAGGGACTTCAAAGATATTTTTGTTGTTTTTGAGCTCATGGAGTCTGATCTGCACCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAGTTTTTCCTATACCAGTTACTTCGAGCATTGAAGTATATTCACACCGCAAATGTCTATCATCGAGACTTGAAGCCAAAGAATATACTGGCCAATGCAAACTGTAAACTTAAAATTTGTGATTTTGGCTTAGCTAGAGTTGCTTTCAATGACACACCATCAACTGTATTTTGGACGGATTATGTAGCTACAAGGTGGTATAGAGCACCAGAGCTCTGTGGATCATTTTACTCAAAGTATACTCCAGCAATTGATATGTGGAGTATAGGTTGCATCTTTGCTGAAGTATTAATAGGAAAACCACTTTTTCCTGGAAAAAATGTTGTCCATCAGTTGGATCTGATTACAGATCTGCTTGGAACTCCCCCACTGGATACGATATCCCAGGTACGCAATGATAAGGCAAGGAGATACCTAACTAATATGAGGAAAAAGCAGCCTGTACCATTTGCACAAAGATTTCCTAAAGCAGATCCTTTATCACTACGACTATTGGAAAGGTTGCTTGCCTTTGATCCAAAAGATCGGCCTACCGCTGAAGAGGCATTAGCTTATCCTTATTTCAAGGGACTTGCAAAAATCGAGAGGGAACCATCCTGCCAGCCTATTACAAAACAGGAGTTTGAATTTGAAAGGCGGAGAGTCACAAAGGAAGAAATTCGAGAGTTAATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTGCATAAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCCGTTGATCAATTAAAAAATCAGTTTGCTCATCTTGAGGAAACTGGTGGTAAAAGTGATCCAGTTATGCCACTTGAAAGAAAACATGCATCACTTCCCAGGTCAACAATTGTACATTCAAACATGGTATCCCCAAAAGAGAAATCAAACATTGCTTCCTGCAAAAACCGGCAAACAGCTGAGGAATGTAATAATAATTCCAGAGATACAGAAAATCCTGCAACAAGGTCTATTCGGAGATTGCAAAGAATTCCATTAGGCATGTGA 1410 0.3943 MAGGLSCSLNSAEMDFFSEYGDASRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPSTVFWTDYVATRWYRAPELCGSFYSKYTPAIDMWSIGCIFAEVLIGKPLFPGKNVVHQLDLITDLLGTPPLDTISQVRNDKARRYLTNMRKKQPVPFAQRFPKADPLSLRLLERLLAFDPKDRPTAEEALAYPYFKGLAKIEREPSCQPITKQEFEFERRRVTKEEIRELIFREILEYHPQLLKDCINGTERTNFLYPSAVDQLKNQFAHLEETGGKSDPVMPLERKHASLPRSTIVHSNMVSPKEKSNIASCKNRQTAEECNNNSRDTENPATRSIRRLQRIPLGM. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g00418 469 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524
Seca8g00418 469 SUPERFAMILY Protein kinase-like (PK-like) 23 321 IPR011009 -
Seca8g00418 469 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00418 469 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
Seca8g00418 469 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00418 469 FunFam Mitogen-activated protein kinase 16 120 - -
Seca8g00418 469 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
Seca8g00418 469 SMART serkin_6 26 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g00418 469 MobiDBLite consensus disorder prediction 427 455 - -
Seca8g00418 469 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca8g00418 469 MobiDBLite consensus disorder prediction 427 453 - -
Seca8g00418 469 CDD STKc_TDY_MAPK 25 362 - -
Seca8g00418 469 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 25 363 - -
Seca8g00418 469 FunFam Mitogen-activated protein kinase 112 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g00418 Seca-Chr8 4804371 4809811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g00418 10 446 MAP Kinase Gene Family AT2G42880 83.753 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca8g00418 Pkinase 9.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g00418 - - aprc:113848523 829.706